| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89052745
Identifier: 89052745
GI number: 89052745
Start: 254752
End: 255276
Strand: Reverse
Name: 89052745
Synonym: Jann_0254
Alternate gene names: NA
Gene position: 255276-254752 (Counterclockwise)
Preceding gene: 89052746
Following gene: 89052743
Centisome position: 5.91
GC content: 65.14
Gene sequence:
>525_bases ATGAGTGATACGGTACTAACCGGCCTATTAGACACTGTTTGGCAGCAATTCGGGCGCGGAACCAAGGACCGCCATCATCC CGCGCGTCACCCTACATTGGCCACCATCGGCACGGACGGGCCGGACCTGCGCACCCTTGTGCTGCGCGCGGCCTCTCACG CGGAGGCGACGCTTGAGTTTCATACCGACGCGGCGTCTCCGAAGGTCGCACACATCCGCCGGGACGCCCGCGTTGCAATC CACATCTGGATCCCAAAGGCGAGCCTGCAAGTCCGCGCCAAAGCCATCGCCAAGATCCTGCCCGGTGACCCAAACCTCTT CGCGCAACTGCCCGAGGCTGCCCGGATGAACTACCAAGGCCCCGTCCCCGGCACCCCGCTCCCGGCCGAGCCGGACGCCA CCCCAAACCGCTTCACGCGTCTGATCTGTCACCTGTCGGAGATCGATGTTCTCCACCTCACCACGCCCCACCAGCGCGCC GTCTACACTGCGCCTGACTGGCGAGGCATCTGGGTCTCCCCCTAA
Upstream 100 bases:
>100_bases AATCCGCAAAGTTGGATGGACACCTCCTTTCCCTATTGGGAAGGCCCGATCACATTCACCGGCACCCACGATGGGCGCGG ATATCTGGAGATGACCGGCT
Downstream 100 bases:
>100_bases GCGCTCGTCTTTCATCTGGGCCGTACAACTCCGGGGGTTTGGGGGCAGGCCCCCAATATAGGGTGCGTTTGGGGGCAGGC CCCAGTGAACGGTGTTAGCC
Product: pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Products: NA
Alternate protein names: Pyridoxamine-Phosphate Oxidase; Pyridoxamine 5-Phosphate Oxidase Family
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MSDTVLTGLLDTVWQQFGRGTKDRHHPARHPTLATIGTDGPDLRTLVLRAASHAEATLEFHTDAASPKVAHIRRDARVAI HIWIPKASLQVRAKAIAKILPGDPNLFAQLPEAARMNYQGPVPGTPLPAEPDATPNRFTRLICHLSEIDVLHLTTPHQRA VYTAPDWRGIWVSP
Sequences:
>Translated_174_residues MSDTVLTGLLDTVWQQFGRGTKDRHHPARHPTLATIGTDGPDLRTLVLRAASHAEATLEFHTDAASPKVAHIRRDARVAI HIWIPKASLQVRAKAIAKILPGDPNLFAQLPEAARMNYQGPVPGTPLPAEPDATPNRFTRLICHLSEIDVLHLTTPHQRA VYTAPDWRGIWVSP >Mature_173_residues SDTVLTGLLDTVWQQFGRGTKDRHHPARHPTLATIGTDGPDLRTLVLRAASHAEATLEFHTDAASPKVAHIRRDARVAIH IWIPKASLQVRAKAIAKILPGDPNLFAQLPEAARMNYQGPVPGTPLPAEPDATPNRFTRLICHLSEIDVLHLTTPHQRAV YTAPDWRGIWVSP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19180; Mature: 19049
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTVLTGLLDTVWQQFGRGTKDRHHPARHPTLATIGTDGPDLRTLVLRAASHAEATLEF CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE HTDAASPKVAHIRRDARVAIHIWIPKASLQVRAKAIAKILPGDPNLFAQLPEAARMNYQG ECCCCCCHHEEEECCCEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHCCHHHCCCCCC PVPGTPLPAEPDATPNRFTRLICHLSEIDVLHLTTPHQRAVYTAPDWRGIWVSP CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCEEEECC >Mature Secondary Structure SDTVLTGLLDTVWQQFGRGTKDRHHPARHPTLATIGTDGPDLRTLVLRAASHAEATLEF CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE HTDAASPKVAHIRRDARVAIHIWIPKASLQVRAKAIAKILPGDPNLFAQLPEAARMNYQG ECCCCCCHHEEEECCCEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHCCHHHCCCCCC PVPGTPLPAEPDATPNRFTRLICHLSEIDVLHLTTPHQRAVYTAPDWRGIWVSP CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA