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The map label for this gene is secB

Identifier: 89052684

GI number: 89052684

Start: 185217

End: 185732

Strand: Direct

Name: secB

Synonym: Jann_0193

Alternate gene names: 89052684

Gene position: 185217-185732 (Clockwise)

Preceding gene: 89052683

Following gene: 89052689

Centisome position: 4.29

GC content: 55.81

Gene sequence:

>516_bases
ATGTCCGACGCCTCTGCAAACGGCGACGCAACCGAAGGCGCCGCACCGGCCGCCGCTCAACTTCCCAAGATGCAAATTCT
TGGCCAGTTCATTCGCGATCTGTCGTTTGAGAATGCCGCCGTGCAATATGGAACGGCGACCCAAGGACAGCCTGACATAC
AAGTTCAGGTCGCACTGGATGCGCGAAAGCGCACGGTTGATAACCAATACGACGTCATCATGAAACTCAAGATCGAGAGC
AAAACCAAGGACGAAGATGCGCCAAAGTCGATTTTCCTGATCGAGCTTGAATATGGCGGCGTCTTCCTAATCGAGAATAT
CGCCGAGCAGCAGCTGCACCCGTTCCTGATGATCGAGTGTCCCAGGATGCTGTTCCCGTTCGTGCGTCGCATCATCTCGG
ACATGACGCGTGACGGCGGATACCCACCGCTGAACCTGGATCAGATCGATTTTGTAGCGCTCTATCGCCAGCAGATCGCC
GCTCGTCAGGCGCAACAGCCTGTTGGAACCGCTTGA

Upstream 100 bases:

>100_bases
GGAGGGCGAGCGCCCCTCCGGCCCATCGGGTTGGCGCAGGGATTGAGGCTCAGCAAAGGGCCTGCTAAAGCACCAGCGAC
CTCGATTTAAGGAGAATCCA

Downstream 100 bases:

>100_bases
GTCAGCGGAATTTCGACCAGACGGTTTGATCACCCAAAGCATCGACAAAGGCTGCATGAGCGGCCTTTTCGACATCTGAT
AATCGGGTTGGTAGCGCGCT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSDASANGDATEGAAPAAAQLPKMQILGQFIRDLSFENAAVQYGTATQGQPDIQVQVALDARKRTVDNQYDVIMKLKIES
KTKDEDAPKSIFLIELEYGGVFLIENIAEQQLHPFLMIECPRMLFPFVRRIISDMTRDGGYPPLNLDQIDFVALYRQQIA
ARQAQQPVGTA

Sequences:

>Translated_171_residues
MSDASANGDATEGAAPAAAQLPKMQILGQFIRDLSFENAAVQYGTATQGQPDIQVQVALDARKRTVDNQYDVIMKLKIES
KTKDEDAPKSIFLIELEYGGVFLIENIAEQQLHPFLMIECPRMLFPFVRRIISDMTRDGGYPPLNLDQIDFVALYRQQIA
ARQAQQPVGTA
>Mature_170_residues
SDASANGDATEGAAPAAAQLPKMQILGQFIRDLSFENAAVQYGTATQGQPDIQVQVALDARKRTVDNQYDVIMKLKIESK
TKDEDAPKSIFLIELEYGGVFLIENIAEQQLHPFLMIECPRMLFPFVRRIISDMTRDGGYPPLNLDQIDFVALYRQQIAA
RQAQQPVGTA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=137, Percent_Identity=33.5766423357664, Blast_Score=73, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_JANSC (Q28W02)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_508135.1
- ProteinModelPortal:   Q28W02
- SMR:   Q28W02
- STRING:   Q28W02
- GeneID:   3932630
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_0193
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   NIDVQAN
- PhylomeDB:   Q28W02
- ProtClustDB:   PRK05751
- BioCyc:   JSP290400:JANN_0193-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 19003; Mature: 18872

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDASANGDATEGAAPAAAQLPKMQILGQFIRDLSFENAAVQYGTATQGQPDIQVQVALD
CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEC
ARKRTVDNQYDVIMKLKIESKTKDEDAPKSIFLIELEYGGVFLIENIAEQQLHPFLMIEC
CHHHCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEHHHHHHHCCCEEEEEC
PRMLFPFVRRIISDMTRDGGYPPLNLDQIDFVALYRQQIAARQAQQPVGTA
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDASANGDATEGAAPAAAQLPKMQILGQFIRDLSFENAAVQYGTATQGQPDIQVQVALD
CCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEC
ARKRTVDNQYDVIMKLKIESKTKDEDAPKSIFLIELEYGGVFLIENIAEQQLHPFLMIEC
CHHHCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEHHHHHHHCCCEEEEEC
PRMLFPFVRRIISDMTRDGGYPPLNLDQIDFVALYRQQIAARQAQQPVGTA
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA