| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89052613
Identifier: 89052613
GI number: 89052613
Start: 112619
End: 113419
Strand: Direct
Name: 89052613
Synonym: Jann_0122
Alternate gene names: NA
Gene position: 112619-113419 (Clockwise)
Preceding gene: 89052612
Following gene: 89052614
Centisome position: 2.61
GC content: 60.8
Gene sequence:
>801_bases ATGACGACGCCCGCCCTGCCGCCAATCGCGATGTTCTGGACGGGTGCGCCCGTGGATTGGATGCAGCGCCTGTCGATGCA TTCCTTCGTCAACCACGGCTACAGGGTCACGCTGTTCAGCCCAAAGGACGCGCCGATTGACCCGCAATGCGATGGGGTTG AGGTCGCCGCGATGGAGGAGATCTACGTCCCTTCCCGGCGCATGGGCAAACACGCCGCGCCAGCGTGTCTGGCCGATGTC TTCCGGCTCTATCTGATGCAGAAGACCGATTACGTCTGGATGGACAGTGACATGCTGTCGATCTCTCCGATGACGCTGAA CCAGGGCTATGCGATGTCGTGGTCCAGTCCCGGCGGCCAGATCAACAACGCCGCCTTGCGCGTGCCGCAGGACAGTAAAG CGCTGCGCTATCTTCTGGACCACATCGAAGACCCGGAGCTGATCCCCGAATGGATGAACCGCGACCACCGTGCCAAACTG AAGGAGCTGCCGCCGGAACGCCGTTTGCTGGCGCAGGGTAAGATGCTCCGCATCGTCTATGGGCCCCGTGGCCTGAACCA CGCCCTTCAGAAGACCGGTGAAGCGGACTTTGCCAGCCCGATGGAGGCCTATTCCCCCGTCCCGTGGTGGCTGACCGATC TGTTCTACAGCCCCAAAGGCGGCGTGGAGCCCTATCTTACCGGGGACACCCGCGTCGTGCATCTCTTCAACGATCAAATC CGCAAGTACAACAAGAACCGCCCCCCGCCGGAGGGTTGTTTCCTGGACCAATATATTAAAGAAAGCGGCTTCAAGGTTTG A
Upstream 100 bases:
>100_bases CAGCTGGGTAACCCATTGGGCGAATATGACATTTTCGACTGCGCCGTGATGTGCGATGACCGCGTGGCCCATCGCGGCCT GACGTCTTGAAAGCCGTGCC
Downstream 100 bases:
>100_bases GATCGCGACAGCGAAAGGCGCCACCATGGACAAGTTCACCACATTGACCGGCATTGCCGCTCCGATGCCCCTGATCAACG TCGATACCGACATGATCATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MTTPALPPIAMFWTGAPVDWMQRLSMHSFVNHGYRVTLFSPKDAPIDPQCDGVEVAAMEEIYVPSRRMGKHAAPACLADV FRLYLMQKTDYVWMDSDMLSISPMTLNQGYAMSWSSPGGQINNAALRVPQDSKALRYLLDHIEDPELIPEWMNRDHRAKL KELPPERRLLAQGKMLRIVYGPRGLNHALQKTGEADFASPMEAYSPVPWWLTDLFYSPKGGVEPYLTGDTRVVHLFNDQI RKYNKNRPPPEGCFLDQYIKESGFKV
Sequences:
>Translated_266_residues MTTPALPPIAMFWTGAPVDWMQRLSMHSFVNHGYRVTLFSPKDAPIDPQCDGVEVAAMEEIYVPSRRMGKHAAPACLADV FRLYLMQKTDYVWMDSDMLSISPMTLNQGYAMSWSSPGGQINNAALRVPQDSKALRYLLDHIEDPELIPEWMNRDHRAKL KELPPERRLLAQGKMLRIVYGPRGLNHALQKTGEADFASPMEAYSPVPWWLTDLFYSPKGGVEPYLTGDTRVVHLFNDQI RKYNKNRPPPEGCFLDQYIKESGFKV >Mature_265_residues TTPALPPIAMFWTGAPVDWMQRLSMHSFVNHGYRVTLFSPKDAPIDPQCDGVEVAAMEEIYVPSRRMGKHAAPACLADVF RLYLMQKTDYVWMDSDMLSISPMTLNQGYAMSWSSPGGQINNAALRVPQDSKALRYLLDHIEDPELIPEWMNRDHRAKLK ELPPERRLLAQGKMLRIVYGPRGLNHALQKTGEADFASPMEAYSPVPWWLTDLFYSPKGGVEPYLTGDTRVVHLFNDQIR KYNKNRPPPEGCFLDQYIKESGFKV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30346; Mature: 30215
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPALPPIAMFWTGAPVDWMQRLSMHSFVNHGYRVTLFSPKDAPIDPQCDGVEVAAMEE CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEEEHHHH IYVPSRRMGKHAAPACLADVFRLYLMQKTDYVWMDSDMLSISPMTLNQGYAMSWSSPGGQ HHCCHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCEEECCEEECCCEEEEECCCCCC INNAALRVPQDSKALRYLLDHIEDPELIPEWMNRDHRAKLKELPPERRLLAQGKMLRIVY CCCCEEECCCCHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHCCHHHHHHHCCCEEEEEE GPRGLNHALQKTGEADFASPMEAYSPVPWWLTDLFYSPKGGVEPYLTGDTRVVHLFNDQI CCCCHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHCCCCCCCCCEECCCCEEEEHHHHHH RKYNKNRPPPEGCFLDQYIKESGFKV HHHCCCCCCCCCCHHHHHHHHCCCCC >Mature Secondary Structure TTPALPPIAMFWTGAPVDWMQRLSMHSFVNHGYRVTLFSPKDAPIDPQCDGVEVAAMEE CCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEEEHHHH IYVPSRRMGKHAAPACLADVFRLYLMQKTDYVWMDSDMLSISPMTLNQGYAMSWSSPGGQ HHCCHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCEEECCEEECCCEEEEECCCCCC INNAALRVPQDSKALRYLLDHIEDPELIPEWMNRDHRAKLKELPPERRLLAQGKMLRIVY CCCCEEECCCCHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHCCHHHHHHHCCCEEEEEE GPRGLNHALQKTGEADFASPMEAYSPVPWWLTDLFYSPKGGVEPYLTGDTRVVHLFNDQI CCCCHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHCCCCCCCCCEECCCCEEEEHHHHHH RKYNKNRPPPEGCFLDQYIKESGFKV HHHCCCCCCCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA