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The map label for this gene is omp-1B [H]

Identifier: 88658633

GI number: 88658633

Start: 1158247

End: 1159098

Strand: Direct

Name: omp-1B [H]

Synonym: ECH_1136

Alternate gene names: 88658633

Gene position: 1158247-1159098 (Clockwise)

Preceding gene: 88657772

Following gene: 88657841

Centisome position: 98.47

GC content: 36.62

Gene sequence:

>852_bases
ATGAATTACAAGAAAATTTTTGTAAGCAGTGCATTAATTTCATTAATGTCAATCTTACCTTACCAATCTTTTGCAGATCC
TGTAACTTCAAATGATACAGGAATCAACGACAGCAGAGAAGGCTTCTACATTAGTGTAAAGTATAATCCAAGCATATCAC
ACTTCAGAAAATTCTCAGCTGAAGAAGCTCCCATCAATGGAAATACTTCTATCACTAAAAAGGTTTTCGGGCTGAAAAAA
GACGGAGATATAGCACAATCTGCGAATTTTAACAGGACAGATCCAGCCCTCGAGTTTCAGAATAACCTAATATCAGGATT
CTCAGGAAGTATTGGTTATGCTATGGATGGGCCAAGAATAGAACTTGAAGCTGCATACCAAAAATTTGATGCAAAAAATC
CTGACAACAATGACACTAATAGCGGTGACTACTATAAATACTTTGGACTATCTCGTGAAGACGCAATAGCAGATAAGAAA
TATGTTGTCCTTAAAAATGAAGGCATCACTTTTATGTCATTAATGGTTAACACTTGCTATGACATTACAGCTGAAGGAGT
ACCTTTCATACCGTATGCATGTGCAGGTGTAGGAGCAGACCTTATAAACGTATTTAAGGATTTTAATTTAAAATTCTCAT
ACCAAGGGAAAATAGGTATTAGCTATCCAATCACACCAGAAGTTTCCGCTTTTATTGGAGGATACTACCACGGAGTTATA
GGAAATAATTTTAACAAAATACCTGTAATAACACCTGTAGTATTAGAAGGAGCTCCTCAAACCACATCTGCGCTAGTAAC
TATTGACACTGGATACTTTGGCGGAGAAGTTGGAGTAAGGTTCACCTTCTAG

Upstream 100 bases:

>100_bases
TGTTGTAAATTTGAAAGAAATTTTATATTCTAGACTTGCTTTTCTTTATTTCTTTCATTATTCTTAAATTTTTATTATCT
TTTATAAAAGGTTTATTAAC

Downstream 100 bases:

>100_bases
TTTTATTTATTTGTTATTATATATAATAAATAGTGAAAAAAATTTAGCAATTCATAATAATAGGGAAAATGTGAAGTTAT
TTCAAGTTTTCCCTTATGTA

Product: major outer membrane protein OMP-1B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MNYKKIFVSSALISLMSILPYQSFADPVTSNDTGINDSREGFYISVKYNPSISHFRKFSAEEAPINGNTSITKKVFGLKK
DGDIAQSANFNRTDPALEFQNNLISGFSGSIGYAMDGPRIELEAAYQKFDAKNPDNNDTNSGDYYKYFGLSREDAIADKK
YVVLKNEGITFMSLMVNTCYDITAEGVPFIPYACAGVGADLINVFKDFNLKFSYQGKIGISYPITPEVSAFIGGYYHGVI
GNNFNKIPVITPVVLEGAPQTTSALVTIDTGYFGGEVGVRFTF

Sequences:

>Translated_283_residues
MNYKKIFVSSALISLMSILPYQSFADPVTSNDTGINDSREGFYISVKYNPSISHFRKFSAEEAPINGNTSITKKVFGLKK
DGDIAQSANFNRTDPALEFQNNLISGFSGSIGYAMDGPRIELEAAYQKFDAKNPDNNDTNSGDYYKYFGLSREDAIADKK
YVVLKNEGITFMSLMVNTCYDITAEGVPFIPYACAGVGADLINVFKDFNLKFSYQGKIGISYPITPEVSAFIGGYYHGVI
GNNFNKIPVITPVVLEGAPQTTSALVTIDTGYFGGEVGVRFTF
>Mature_283_residues
MNYKKIFVSSALISLMSILPYQSFADPVTSNDTGINDSREGFYISVKYNPSISHFRKFSAEEAPINGNTSITKKVFGLKK
DGDIAQSANFNRTDPALEFQNNLISGFSGSIGYAMDGPRIELEAAYQKFDAKNPDNNDTNSGDYYKYFGLSREDAIADKK
YVVLKNEGITFMSLMVNTCYDITAEGVPFIPYACAGVGADLINVFKDFNLKFSYQGKIGISYPITPEVSAFIGGYYHGVI
GNNFNKIPVITPVVLEGAPQTTSALVTIDTGYFGGEVGVRFTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 31017; Mature: 31017

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKKIFVSSALISLMSILPYQSFADPVTSNDTGINDSREGFYISVKYNPSISHFRKFSA
CCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHCCC
EEAPINGNTSITKKVFGLKKDGDIAQSANFNRTDPALEFQNNLISGFSGSIGYAMDGPRI
CCCCCCCCCHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCEE
ELEAAYQKFDAKNPDNNDTNSGDYYKYFGLSREDAIADKKYVVLKNEGITFMSLMVNTCY
EHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHCCCCEEEEEECCCCHHHHHHHHHHH
DITAEGVPFIPYACAGVGADLINVFKDFNLKFSYQGKIGISYPITPEVSAFIGGYYHGVI
HCCCCCCCCCCHHHHHCCHHHHHHHHHCCEEEEECCCEEECCCCCCCHHHHHCCEEEEEE
GNNFNKIPVITPVVLEGAPQTTSALVTIDTGYFGGEVGVRFTF
CCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEC
>Mature Secondary Structure
MNYKKIFVSSALISLMSILPYQSFADPVTSNDTGINDSREGFYISVKYNPSISHFRKFSA
CCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHCCC
EEAPINGNTSITKKVFGLKKDGDIAQSANFNRTDPALEFQNNLISGFSGSIGYAMDGPRI
CCCCCCCCCHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCEE
ELEAAYQKFDAKNPDNNDTNSGDYYKYFGLSREDAIADKKYVVLKNEGITFMSLMVNTCY
EHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHCCCCEEEEEECCCCHHHHHHHHHHH
DITAEGVPFIPYACAGVGADLINVFKDFNLKFSYQGKIGISYPITPEVSAFIGGYYHGVI
HCCCCCCCCCCHHHHHCCHHHHHHHHHCCEEEEECCCEEECCCCCCCHHHHHCCEEEEEE
GNNFNKIPVITPVVLEGAPQTTSALVTIDTGYFGGEVGVRFTF
CCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]