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The map label for this gene is omp-1C [H]

Identifier: 88657841

GI number: 88657841

Start: 1159401

End: 1160243

Strand: Direct

Name: omp-1C [H]

Synonym: ECH_1137

Alternate gene names: 88657841

Gene position: 1159401-1160243 (Clockwise)

Preceding gene: 88658633

Following gene: 88657899

Centisome position: 98.57

GC content: 37.25

Gene sequence:

>843_bases
ATGAACTGCAAAAAATTTTTTATAACAACTGCATTGGCATTGCCAATGTCTTTCTTACCTGGAATATTACTTTCTGAACC
AGTACAAGATGACAGTGTGAGTGGCAATTTCTATATTAGTGGCAAGTACATGCCAAGTGCTTCTCATTTTGGAGTTTTCT
CTGCCAAAGAAGAAAAAAATCCTACTGTCGCGTTGTATGGTTTGAAACAAGATTGGAACGGTGTTAGTGCTTCAAGTCAT
GCTGATGCGGACTTTAATAACAAAGGTTATTCTTTTAAATACGAAAACAATCCATTTCTAGGTTTTGCAGGAGCTATTGG
TTATTCAATGGGTGGTCCAAGAATAGAGTTTGAAGTGTCCTATGAAACATTTGACGTGAAAAATCAAGGTGGTAATTACA
AAAATGATGCTCACAGATACTGTGCCTTAGATCGTAAAGCAAGCAGCACTAATGCCACAGCTAGTCACTACGTGCTACTA
AAAAATGAAGGACTACTTGATATATCACTTATGTTGAATGCATGCTATGACGTAGTAAGTGAAGGAATACCTTTCTCTCC
TTACATATGTGCAGGTGTTGGTACCGATTTAATATCCATGTTTGAAGCTATAAACCCTAAAATTTCTTATCAAGGAAAGT
TAGGTTTGAGTTACTCTATAAACCCAGAAGCTTCTGTCTTTGTTGGTGGACATTTTCATAAAGTTGCAGGTAATGAATTC
AGGGACATTTCTACTCTTAAAGCGTTTGCTACACCATCATCTGCAGCTACTCCAGACTTAGCAACAGTAACACTGAGTGT
GTGTCACTTTGGAGTAGAACTTGGAGGAAGATTTAACTTCTAA

Upstream 100 bases:

>100_bases
ACAAAGACTACTTATGTATTATAGTAAAAACTAGCTTATAACTTGTTTTTACATTGTAGTTCTACTATTGTTAATTTATT
TTCACTATTTTAGGTATAAT

Downstream 100 bases:

>100_bases
TTTTATTATTGCCACATGTTAAAAATAATCTAAACTTGTTTTCATTATTGCTACAAATAAATAAAATAGTGGCAAAAAAA
TGTAGCAATAAGAGGGGGGG

Product: major outer membrane protein OMP-1C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MNCKKFFITTALALPMSFLPGILLSEPVQDDSVSGNFYISGKYMPSASHFGVFSAKEEKNPTVALYGLKQDWNGVSASSH
ADADFNNKGYSFKYENNPFLGFAGAIGYSMGGPRIEFEVSYETFDVKNQGGNYKNDAHRYCALDRKASSTNATASHYVLL
KNEGLLDISLMLNACYDVVSEGIPFSPYICAGVGTDLISMFEAINPKISYQGKLGLSYSINPEASVFVGGHFHKVAGNEF
RDISTLKAFATPSSAATPDLATVTLSVCHFGVELGGRFNF

Sequences:

>Translated_280_residues
MNCKKFFITTALALPMSFLPGILLSEPVQDDSVSGNFYISGKYMPSASHFGVFSAKEEKNPTVALYGLKQDWNGVSASSH
ADADFNNKGYSFKYENNPFLGFAGAIGYSMGGPRIEFEVSYETFDVKNQGGNYKNDAHRYCALDRKASSTNATASHYVLL
KNEGLLDISLMLNACYDVVSEGIPFSPYICAGVGTDLISMFEAINPKISYQGKLGLSYSINPEASVFVGGHFHKVAGNEF
RDISTLKAFATPSSAATPDLATVTLSVCHFGVELGGRFNF
>Mature_280_residues
MNCKKFFITTALALPMSFLPGILLSEPVQDDSVSGNFYISGKYMPSASHFGVFSAKEEKNPTVALYGLKQDWNGVSASSH
ADADFNNKGYSFKYENNPFLGFAGAIGYSMGGPRIEFEVSYETFDVKNQGGNYKNDAHRYCALDRKASSTNATASHYVLL
KNEGLLDISLMLNACYDVVSEGIPFSPYICAGVGTDLISMFEAINPKISYQGKLGLSYSINPEASVFVGGHFHKVAGNEF
RDISTLKAFATPSSAATPDLATVTLSVCHFGVELGGRFNF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 30322; Mature: 30322

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCKKFFITTALALPMSFLPGILLSEPVQDDSVSGNFYISGKYMPSASHFGVFSAKEEKN
CCCHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCC
PTVALYGLKQDWNGVSASSHADADFNNKGYSFKYENNPFLGFAGAIGYSMGGPRIEFEVS
CEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEHHHHCCCCCCCEEEEEEE
YETFDVKNQGGNYKNDAHRYCALDRKASSTNATASHYVLLKNEGLLDISLMLNACYDVVS
EEEEEEECCCCCCCCCCHHEEEECCCCCCCCCCCEEEEEEECCCCEEHHHHHHHHHHHHH
EGIPFSPYICAGVGTDLISMFEAINPKISYQGKLGLSYSINPEASVFVGGHFHKVAGNEF
CCCCCCCEEECCCCHHHHHHHHHCCCCEEECCCCCEEEECCCCCEEEECCEEEECCCCCC
RDISTLKAFATPSSAATPDLATVTLSVCHFGVELGGRFNF
HHHHHHHEECCCCCCCCCCHHHEEHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNCKKFFITTALALPMSFLPGILLSEPVQDDSVSGNFYISGKYMPSASHFGVFSAKEEKN
CCCHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCC
PTVALYGLKQDWNGVSASSHADADFNNKGYSFKYENNPFLGFAGAIGYSMGGPRIEFEVS
CEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEHHHHCCCCCCCEEEEEEE
YETFDVKNQGGNYKNDAHRYCALDRKASSTNATASHYVLLKNEGLLDISLMLNACYDVVS
EEEEEEECCCCCCCCCCHHEEEECCCCCCCCCCCEEEEEEECCCCEEHHHHHHHHHHHHH
EGIPFSPYICAGVGTDLISMFEAINPKISYQGKLGLSYSINPEASVFVGGHFHKVAGNEF
CCCCCCCEEECCCCHHHHHHHHHCCCCEEECCCCCEEEECCCCCEEEECCEEEECCCCCC
RDISTLKAFATPSSAATPDLATVTLSVCHFGVELGGRFNF
HHHHHHHEECCCCCCCCCCHHHEEHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]