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The map label for this gene is omp-1A [H]

Identifier: 88657772

GI number: 88657772

Start: 1156786

End: 1157667

Strand: Direct

Name: omp-1A [H]

Synonym: ECH_1135

Alternate gene names: 88657772

Gene position: 1156786-1157667 (Clockwise)

Preceding gene: 88658596

Following gene: 88658633

Centisome position: 98.35

GC content: 32.99

Gene sequence:

>882_bases
ATGAATAAGAAAAACAAATTCTTTACAATAAGTACAGCAATGGTATGCTTATTGTTATTACCTGGTATATCATTTTCAGA
AACTATAAACAACAGTGCTAAAAAACAGCCTGGGTTATATATCAGTGGGCAGTACAAACCTAGTGTTTCAGTTTTTAGTA
ATTTTTCAGTAAAAGAAACTAATGTTCCCACAAAGCAGTTAATAGCACTTAAAAAAGACATTAATTCTGTTGCAGTTGGT
AGTAATGCTACTACAGGTATTAGCAATCCAGGTAATTTCACAATTCCTTATACTGCAGAATTTCAAGATAATGTTGCCAA
TTTCAATGGGGCTGTTGGTTACTCTTTTCCTGATAGTCTAAGAATTGAAATAGAGGGATTTCATGAAAAATTTGATGTCA
AAAACCCTGGAGGTTACACACAAGTAAAAGATGCGTACCGTTATTTTGCACTAGCACGTGATTTAAAAGATGGCTTCTTT
GAACCTAAAGCGGAAGATACAGGTGTTTATCATACTGTTATGAAAAATGATGGATTATCTATTTTATCTACTATGGTTAA
CGTCTGTTACGATTTTTCTGTAGATGAATTACCAGTCTTACCTTATATATGTGCAGGTATGGGTATAAACGCCATAGAAT
TCTTCGACGCTTTACATGTAAAATTTGCTTACCAAGGCAAACTAGGTATTAGCTATCAACTATTTACTAAAGTAAATTTA
TTCCTTGATGGGTATTACCATCAAGTAATAGGCAATCAATTCAAAAACTTAAACGTAAACCATGTTTACACACTTAAAGA
ATCTCCTAAAGTCACATCTGCAGTAGCTACACTTGACATTGCATACTTTGGTGGCGAAGTTGGAATAAGATTCACATTTT
AA

Upstream 100 bases:

>100_bases
CAAAGTTACATCTGCAGTAGCTACACTTGACATTGGGTATTTTGGTGGTGAAATTGGAGCAAGGCTTATATTTTAATTAT
AAACAAATATGGAAAATCTC

Downstream 100 bases:

>100_bases
TTGCTCAACCATAAAATAATGGGAAATTACCTTTTCTAGGAAGTTTCTCATTATTTAACAGTTAACTTTCTGTAAACTTC
TAATAACAGTATTTTGTTCA

Product: major outer membrane protein OMP-1A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MNKKNKFFTISTAMVCLLLLPGISFSETINNSAKKQPGLYISGQYKPSVSVFSNFSVKETNVPTKQLIALKKDINSVAVG
SNATTGISNPGNFTIPYTAEFQDNVANFNGAVGYSFPDSLRIEIEGFHEKFDVKNPGGYTQVKDAYRYFALARDLKDGFF
EPKAEDTGVYHTVMKNDGLSILSTMVNVCYDFSVDELPVLPYICAGMGINAIEFFDALHVKFAYQGKLGISYQLFTKVNL
FLDGYYHQVIGNQFKNLNVNHVYTLKESPKVTSAVATLDIAYFGGEVGIRFTF

Sequences:

>Translated_293_residues
MNKKNKFFTISTAMVCLLLLPGISFSETINNSAKKQPGLYISGQYKPSVSVFSNFSVKETNVPTKQLIALKKDINSVAVG
SNATTGISNPGNFTIPYTAEFQDNVANFNGAVGYSFPDSLRIEIEGFHEKFDVKNPGGYTQVKDAYRYFALARDLKDGFF
EPKAEDTGVYHTVMKNDGLSILSTMVNVCYDFSVDELPVLPYICAGMGINAIEFFDALHVKFAYQGKLGISYQLFTKVNL
FLDGYYHQVIGNQFKNLNVNHVYTLKESPKVTSAVATLDIAYFGGEVGIRFTF
>Mature_293_residues
MNKKNKFFTISTAMVCLLLLPGISFSETINNSAKKQPGLYISGQYKPSVSVFSNFSVKETNVPTKQLIALKKDINSVAVG
SNATTGISNPGNFTIPYTAEFQDNVANFNGAVGYSFPDSLRIEIEGFHEKFDVKNPGGYTQVKDAYRYFALARDLKDGFF
EPKAEDTGVYHTVMKNDGLSILSTMVNVCYDFSVDELPVLPYICAGMGINAIEFFDALHVKFAYQGKLGISYQLFTKVNL
FLDGYYHQVIGNQFKNLNVNHVYTLKESPKVTSAVATLDIAYFGGEVGIRFTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 32475; Mature: 32475

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKNKFFTISTAMVCLLLLPGISFSETINNSAKKQPGLYISGQYKPSVSVFSNFSVKET
CCCCCEEEEHHHHHHHHHHHCCCCHHHHHCCCHHCCCCEEEECCCCCCHHHHCCCCEECC
NVPTKQLIALKKDINSVAVGSNATTGISNPGNFTIPYTAEFQDNVANFNGAVGYSFPDSL
CCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCE
RIEIEGFHEKFDVKNPGGYTQVKDAYRYFALARDLKDGFFEPKAEDTGVYHTVMKNDGLS
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHH
ILSTMVNVCYDFSVDELPVLPYICAGMGINAIEFFDALHVKFAYQGKLGISYQLFTKVNL
HHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHEEEEEEECCCCCEEEEEEEEEE
FLDGYYHQVIGNQFKNLNVNHVYTLKESPKVTSAVATLDIAYFGGEVGIRFTF
EHHHHHHHHHCCHHHCCCCCEEEEECCCCCHHHHHHEEEEEEECCCEEEEEEC
>Mature Secondary Structure
MNKKNKFFTISTAMVCLLLLPGISFSETINNSAKKQPGLYISGQYKPSVSVFSNFSVKET
CCCCCEEEEHHHHHHHHHHHCCCCHHHHHCCCHHCCCCEEEECCCCCCHHHHCCCCEECC
NVPTKQLIALKKDINSVAVGSNATTGISNPGNFTIPYTAEFQDNVANFNGAVGYSFPDSL
CCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCE
RIEIEGFHEKFDVKNPGGYTQVKDAYRYFALARDLKDGFFEPKAEDTGVYHTVMKNDGLS
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHH
ILSTMVNVCYDFSVDELPVLPYICAGMGINAIEFFDALHVKFAYQGKLGISYQLFTKVNL
HHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHEEEEEEECCCCCEEEEEEEEEE
FLDGYYHQVIGNQFKNLNVNHVYTLKESPKVTSAVATLDIAYFGGEVGIRFTF
EHHHHHHHHHCCHHHCCCCCEEEEECCCCCHHHHHHEEEEEEECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]