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The map label for this gene is ygaF [H]

Identifier: 88658558

GI number: 88658558

Start: 542604

End: 543047

Strand: Direct

Name: ygaF [H]

Synonym: ECH_0539

Alternate gene names: 88658558

Gene position: 542604-543047 (Clockwise)

Preceding gene: 88657836

Following gene: 88658073

Centisome position: 46.13

GC content: 28.6

Gene sequence:

>444_bases
ATGACAGTTGAAATAGGGGATGATGCACCACATTTTAAGGGTATTGATGCTTATAAAGGTGAAAAGAATATAGTATTGTA
TTTTTATCCAAAAGATGATACTCCTGGTTGTACAAGGGAAGCAAAAGATTTTCAAGATGCGATGGATGATTTTGCTGATT
TAAATACTGTTGTAATTGGTGTATCTAAGGATAGTGAAAAATCTCATGAAAATTTCAAGAAGAAACATAATATATTATTT
GAATTAATATCTGATGAAAGTTCTGAGTTATCAAAGCAATATGGTACTTGGGTAGAAAAGAATATGTTTGGAAAATCTTA
TATGGGTATAGATCGTTCTACATTTTTAATAGATAAAAATGGAAAAATAAGAAAAATGTGGAGAAATGTAAAAGTTAGTG
GACATGTTGATAATGTTCTTGAGATAATAAGAGAGATAATGTAA

Upstream 100 bases:

>100_bases
TTATTGAAGCTGCAATCAGAGTTGTATTAAAATATGTGAAAATTATTGACTCCTATTAATATTTATAGCATTGTTTTAAA
AAATTTATATGGAGGAATAT

Downstream 100 bases:

>100_bases
ATTGCAAACTAATGATACAAAAGGCAAAAAAGCTGAATGTTAGGTTGTATGTGGATTGTACTCTTAGTAAATCTTCTATA
GTAATATTAGATAATATTGC

Product: anti-oxidant AhpCTSA family protein

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MTVEIGDDAPHFKGIDAYKGEKNIVLYFYPKDDTPGCTREAKDFQDAMDDFADLNTVVIGVSKDSEKSHENFKKKHNILF
ELISDESSELSKQYGTWVEKNMFGKSYMGIDRSTFLIDKNGKIRKMWRNVKVSGHVDNVLEIIREIM

Sequences:

>Translated_147_residues
MTVEIGDDAPHFKGIDAYKGEKNIVLYFYPKDDTPGCTREAKDFQDAMDDFADLNTVVIGVSKDSEKSHENFKKKHNILF
ELISDESSELSKQYGTWVEKNMFGKSYMGIDRSTFLIDKNGKIRKMWRNVKVSGHVDNVLEIIREIM
>Mature_146_residues
TVEIGDDAPHFKGIDAYKGEKNIVLYFYPKDDTPGCTREAKDFQDAMDDFADLNTVVIGVSKDSEKSHENFKKKHNILFE
LISDESSELSKQYGTWVEKNMFGKSYMGIDRSTFLIDKNGKIRKMWRNVKVSGHVDNVLEIIREIM

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI32483377, Length=157, Percent_Identity=31.8471337579618, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI5802974, Length=159, Percent_Identity=31.4465408805031, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1788825, Length=152, Percent_Identity=37.5, Blast_Score=106, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI193204376, Length=160, Percent_Identity=32.5, Blast_Score=66, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI32565831, Length=160, Percent_Identity=32.5, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17738015, Length=164, Percent_Identity=34.1463414634146, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 16934; Mature: 16803

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVEIGDDAPHFKGIDAYKGEKNIVLYFYPKDDTPGCTREAKDFQDAMDDFADLNTVVIG
CEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
VSKDSEKSHENFKKKHNILFELISDESSELSKQYGTWVEKNMFGKSYMGIDRSTFLIDKN
ECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCCCHHCCCCCCEEEEECC
GKIRKMWRNVKVSGHVDNVLEIIREIM
CHHHHHHHCCCCCCCHHHHHHHHHHHC
>Mature Secondary Structure 
TVEIGDDAPHFKGIDAYKGEKNIVLYFYPKDDTPGCTREAKDFQDAMDDFADLNTVVIG
EEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
VSKDSEKSHENFKKKHNILFELISDESSELSKQYGTWVEKNMFGKSYMGIDRSTFLIDKN
ECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCCCHHCCCCCCEEEEECC
GKIRKMWRNVKVSGHVDNVLEIIREIM
CHHHHHHHCCCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]