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The map label for this gene is rimM

Identifier: 88658505

GI number: 88658505

Start: 1005

End: 1532

Strand: Direct

Name: rimM

Synonym: ECH_0002

Alternate gene names: 88658505

Gene position: 1005-1532 (Clockwise)

Preceding gene: 88657847

Following gene: 88658005

Centisome position: 0.09

GC content: 29.17

Gene sequence:

>528_bases
ATGGAAAATGATTTAATATGCCTCGGTGTGATTACATCATCTCACGGGATTAGCGGACATGTAAAAATAAAAACTTTTAC
AGAAAACCCAGAAGATTTTACATCTTACGGAACATTAACTGATGGGATAAACACGTACGAAGTAGAAATAATATCTATCA
TATCACAAAACATAATAATTGCACAAATTAAAGGCATAGTGTCAAGAACCGATGCAGATTTACTAAGAAACAAAAAGTTT
TTTGTAGAGAAAAACAAATTACCTAACCCTACAAATGATGATGAATTCTATTATAGCGATTTAATAGGGCTAAACGTTGT
TTTAGAAAACAATAATGTTTATGGAAACATAAAGAAAATCCACAATTTTGGATCATGTGATATTATAGAAATACGTCTTT
CTAATTCAAAAAAAAGCACTATGTTACCTTTTACAAAAGATATATTCCCCTATGTCAATGTCAAAGAAAAATACATAATA
ATAACATTGCCAGAAGTTATAGGAAATAACAGTGACATTCAACGTTAA

Upstream 100 bases:

>100_bases
TACGCAAAAGTAATTCTTAAAAATCACTATATATAAAATTGTAATTGAGCTAATTATACATAGCATATATTATAATATAA
ATTATGGTTTACGTATATTA

Downstream 100 bases:

>100_bases
CGTTTTAACCATATTTCCAGAAATGTTTCCAGGAACATTAAGCCATTCAATAATAGGTAGAGCCCTAAATAAAGGCCTTT
GGAACCTTAATGTTATCGAT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MENDLICLGVITSSHGISGHVKIKTFTENPEDFTSYGTLTDGINTYEVEIISIISQNIIIAQIKGIVSRTDADLLRNKKF
FVEKNKLPNPTNDDEFYYSDLIGLNVVLENNNVYGNIKKIHNFGSCDIIEIRLSNSKKSTMLPFTKDIFPYVNVKEKYII
ITLPEVIGNNSDIQR

Sequences:

>Translated_175_residues
MENDLICLGVITSSHGISGHVKIKTFTENPEDFTSYGTLTDGINTYEVEIISIISQNIIIAQIKGIVSRTDADLLRNKKF
FVEKNKLPNPTNDDEFYYSDLIGLNVVLENNNVYGNIKKIHNFGSCDIIEIRLSNSKKSTMLPFTKDIFPYVNVKEKYII
ITLPEVIGNNSDIQR
>Mature_175_residues
MENDLICLGVITSSHGISGHVKIKTFTENPEDFTSYGTLTDGINTYEVEIISIISQNIIIAQIKGIVSRTDADLLRNKKF
FVEKNKLPNPTNDDEFYYSDLIGLNVVLENNNVYGNIKKIHNFGSCDIIEIRLSNSKKSTMLPFTKDIFPYVNVKEKYII
ITLPEVIGNNSDIQR

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_EHRCR (Q2GI96)

Other databases:

- EMBL:   CP000236
- RefSeq:   YP_506837.1
- ProteinModelPortal:   Q2GI96
- SMR:   Q2GI96
- STRING:   Q2GI96
- GeneID:   3927144
- GenomeReviews:   CP000236_GR
- KEGG:   ech:ECH_0002
- TIGR:   ECH_0002
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- ProtClustDB:   PRK14592
- BioCyc:   ECHA205920:ECH_0002-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19793; Mature: 19793

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENDLICLGVITSSHGISGHVKIKTFTENPEDFTSYGTLTDGINTYEVEIISIISQNIII
CCCCEEEEEEEECCCCCCEEEEEEEECCCCHHHHHCCCCCCCCCEEEEEEEEEHHCCEEE
AQIKGIVSRTDADLLRNKKFFVEKNKLPNPTNDDEFYYSDLIGLNVVLENNNVYGNIKKI
EEHHHHHCCCCHHHHCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCEEEEHHHC
HNFGSCDIIEIRLSNSKKSTMLPFTKDIFPYVNVKEKYIIITLPEVIGNNSDIQR
CCCCCCEEEEEEECCCCCCEECCCCHHCCCCCCCCCCEEEEEEHHHHCCCCCCCC
>Mature Secondary Structure
MENDLICLGVITSSHGISGHVKIKTFTENPEDFTSYGTLTDGINTYEVEIISIISQNIII
CCCCEEEEEEEECCCCCCEEEEEEEECCCCHHHHHCCCCCCCCCEEEEEEEEEHHCCEEE
AQIKGIVSRTDADLLRNKKFFVEKNKLPNPTNDDEFYYSDLIGLNVVLENNNVYGNIKKI
EEHHHHHCCCCHHHHCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCEEEEHHHC
HNFGSCDIIEIRLSNSKKSTMLPFTKDIFPYVNVKEKYIIITLPEVIGNNSDIQR
CCCCCCEEEEEEECCCCCCEECCCCHHCCCCCCCCCCEEEEEEHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA