| Definition | Ehrlichia chaffeensis str. Arkansas, complete genome. |
|---|---|
| Accession | NC_007799 |
| Length | 1,176,248 |
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The map label for this gene is infB
Identifier: 88657990
GI number: 88657990
Start: 569101
End: 571593
Strand: Direct
Name: infB
Synonym: ECH_0563
Alternate gene names: 88657990
Gene position: 569101-571593 (Clockwise)
Preceding gene: 88657698
Following gene: 88658124
Centisome position: 48.38
GC content: 31.45
Gene sequence:
>2493_bases ATGTCAGGTAAAATTGAACGTACAACACTCAAGCTTAGTGATAAGTTAAAACTGTCTTCAAATATACATCAAGGTACAAA GTTTTCTTTAAAGAAGTCTGTGACCACTGTAGAAGTTCGTAAAAGTAAAAAAAGGAAAGATATTAATAATATTGAACAAG CTTCTGTAGTATTGCAAAATGATAATGCTTACCAGGATAATGAAAGTAATAATTCCTTAACTATACAAGAGCAAATTTCT CGTATGAATGCTCTACAGAATGCTAATATATGTGAAAAAAAGGAAGATATCAAAGAAGATACAAGTGATGTTAATCTTCA AGTAACAGAGTCAACATCTGTTGAAAAAAGTGAAAGTGATGATGTTACTCTTGAGGAAGAGAGTAGTAAAAAAGTTGAAG AGCAGGTAGTTGAAGAGGCTCATGATAATACTGATACTGTATCTTTGAATGTTGTTGAAAATGTACAAGAAGAGAGTCAG GTAGATAACCAAGTTGAAAGCAGTAATATAAGTGATATATTGCAGCCTAAAGGCATTGAAGAGAAAAAACTTAAAAAGTA TGAAAAAGAGCATGAAGAAAAGAAAGGAAATCCTAAGAAAGGGGTTTCTAATAATATGTATAGTAAGCATGTAAAATTAG TAATAGAAGAGGAATTAGAAGATAATAATAAGCAGGTTATTCAAACACATAAAAGTAGGAAGAATCGTTCTACTAGTTCT GTAAAGAATAAAATTACTCGCAAGGTTCTTATACCTAAGAAGATTACTGTACAGGAGTTAGCGAGTAGTATGTCTGAACG AGTAAAAGATGTACAACATATGTTATTTCAAATGGGGAGACGTGATATTAAGCCAACAGATTTTTTAGATTCAGATCATG CTTCTGTTATTGTAGAAGCTTTTAATCATACTTTTAAATTAGTGAATGATGGTAAATTAGAAGAAGATTTATATGCTGAT GGTAATGATAAGGAATTACTTCCTAGAGCACCAGTTGTAACTGTTATGGGGCATGTAGACCATGGAAAAACTTCATTACT TGATGCTATACGCAAATCAAATGTTGCAGATGGGGAATTTAAAGGCATTACACAACATATAGGTGCATATCAAATAATGC TTGATGGCGATAAGAGAATTACTTTTATTGATACACCAGGTCATGAGGCGTTTACTGCTATGAGAGCATGTGGTACCAAT GTTACTGATATAGTAGTATTAGTTGTTGCTGCTGATGATGGTATTATGCCTCAAACTATTGAATCAATTAATCATGTAAA AGCAGCTAATGTAGCGATGATAGTTGCAGTTAATAAAATTGATAAGCATGATGCTAATATTGATAAAATTACTAATAGTT TGCTTAATCATGGAGTAGTTGCAGAGAGTTTAGGTGGGGATGTTATTGTAGTTCCTGTATCTGCTAAGGAAAGGATAAAT TTAGATCAATTGAAGTCAAGTATATTATTAATGGCAGAGTTATTAGAGTTGAAAGCTGTTTATGATACTAGAGCATCTGG AGTAGTAATTGAATCAAAAGTTGATAGAAATTGTGGGGTGGTAGCAACTTTAATAGTACAAAAAGGGACATTAAAAGCTG GTGATATTATTGTTGTTGGTCATAATTCATATGGTAAAGTGCGTAATATGTTTAATAGTGATGGAAGAAGTGAAAAAGTT GCTATTCCGTCAATGCCAGTAAAAGTGTTAGGGTTAAATAATGTACCTAACTCTGGAACTAATTTTATTGTTGTGGATTC TGAAAAGCAGGCACGTGAGTTGATTAGTTATAGACAAGAGTTATTTAATGCAGAATTAGAAGCAAATGCAAAACCAAAAA TGGATGCTAATAGCATATTAGCTTGTGGTGTGGTTGATGAGTTAAATGTGATTTTGAAGTGTGATGTTATGGGGTCTGTT GAAGCAATATGTTATTCAATCAGTAAAATAACTCATGAGGATATAAAGTTGAATGTTTTATATAAGGGTGTAGGGAACGT TACAAAGTCAGATGTGTTATTGGCTGAAACATCGAATTCTATAATTTTAGCTTTTAATGTCAAAACAGATGCTTCAGTAA AAGAATTGGCAAAGCAGAAGTGTATTGAAATAAAGCATTATTCAGTTATATACGATATAATTGATGATGTAAAAAAGATA TTAAGTAGTATGTTAAAACCATTACAGCAAGAAGTGCAAGTTGGTACTTTATCTATAAGAAAAGTGTTTTCTTCTGGAAG TATAGGAAGTGTACTTGGATGTTATGTGACAAATGGAATAGTTAGGAAAGGTGCTTTAGTAAAATTGATTCGTAATAATA ATGTTATTCATGAAGGGAAAATTAAGGTTTTACGTCGTTTTAAAGATGATGTAAAAGAAGTCGCTGCTGGGTTTGAATGT GGTATTTTGTTAGATTATTCAAAAGAAATATATCCAGAAAGTGATATAATTCATATATTAGAGATAGTAGAAGAAATTAG AGTTATTAAATGA
Upstream 100 bases:
>100_bases TGTTATATTAGAGTCTCGTAAGAAAATAGGATGGTTATAACTTTTGTTTTTTGGGTAGTTGTCTATGAATGAGTCTAAAA GTGTTGTAGATAGTGGGTTG
Downstream 100 bases:
>100_bases TTTATAAATCTGAAAGTTTTAGGAATTTAAAAGTTGCTTCAGTATTGAATAGGGCGATATCTAGAGTATTAATGCAAGAT ATTTGTTTGTTTAATAGTCA
Product: translation initiation factor IF-2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 830; Mature: 829
Protein sequence:
>830_residues MSGKIERTTLKLSDKLKLSSNIHQGTKFSLKKSVTTVEVRKSKKRKDINNIEQASVVLQNDNAYQDNESNNSLTIQEQIS RMNALQNANICEKKEDIKEDTSDVNLQVTESTSVEKSESDDVTLEEESSKKVEEQVVEEAHDNTDTVSLNVVENVQEESQ VDNQVESSNISDILQPKGIEEKKLKKYEKEHEEKKGNPKKGVSNNMYSKHVKLVIEEELEDNNKQVIQTHKSRKNRSTSS VKNKITRKVLIPKKITVQELASSMSERVKDVQHMLFQMGRRDIKPTDFLDSDHASVIVEAFNHTFKLVNDGKLEEDLYAD GNDKELLPRAPVVTVMGHVDHGKTSLLDAIRKSNVADGEFKGITQHIGAYQIMLDGDKRITFIDTPGHEAFTAMRACGTN VTDIVVLVVAADDGIMPQTIESINHVKAANVAMIVAVNKIDKHDANIDKITNSLLNHGVVAESLGGDVIVVPVSAKERIN LDQLKSSILLMAELLELKAVYDTRASGVVIESKVDRNCGVVATLIVQKGTLKAGDIIVVGHNSYGKVRNMFNSDGRSEKV AIPSMPVKVLGLNNVPNSGTNFIVVDSEKQARELISYRQELFNAELEANAKPKMDANSILACGVVDELNVILKCDVMGSV EAICYSISKITHEDIKLNVLYKGVGNVTKSDVLLAETSNSIILAFNVKTDASVKELAKQKCIEIKHYSVIYDIIDDVKKI LSSMLKPLQQEVQVGTLSIRKVFSSGSIGSVLGCYVTNGIVRKGALVKLIRNNNVIHEGKIKVLRRFKDDVKEVAAGFEC GILLDYSKEIYPESDIIHILEIVEEIRVIK
Sequences:
>Translated_830_residues MSGKIERTTLKLSDKLKLSSNIHQGTKFSLKKSVTTVEVRKSKKRKDINNIEQASVVLQNDNAYQDNESNNSLTIQEQIS RMNALQNANICEKKEDIKEDTSDVNLQVTESTSVEKSESDDVTLEEESSKKVEEQVVEEAHDNTDTVSLNVVENVQEESQ VDNQVESSNISDILQPKGIEEKKLKKYEKEHEEKKGNPKKGVSNNMYSKHVKLVIEEELEDNNKQVIQTHKSRKNRSTSS VKNKITRKVLIPKKITVQELASSMSERVKDVQHMLFQMGRRDIKPTDFLDSDHASVIVEAFNHTFKLVNDGKLEEDLYAD GNDKELLPRAPVVTVMGHVDHGKTSLLDAIRKSNVADGEFKGITQHIGAYQIMLDGDKRITFIDTPGHEAFTAMRACGTN VTDIVVLVVAADDGIMPQTIESINHVKAANVAMIVAVNKIDKHDANIDKITNSLLNHGVVAESLGGDVIVVPVSAKERIN LDQLKSSILLMAELLELKAVYDTRASGVVIESKVDRNCGVVATLIVQKGTLKAGDIIVVGHNSYGKVRNMFNSDGRSEKV AIPSMPVKVLGLNNVPNSGTNFIVVDSEKQARELISYRQELFNAELEANAKPKMDANSILACGVVDELNVILKCDVMGSV EAICYSISKITHEDIKLNVLYKGVGNVTKSDVLLAETSNSIILAFNVKTDASVKELAKQKCIEIKHYSVIYDIIDDVKKI LSSMLKPLQQEVQVGTLSIRKVFSSGSIGSVLGCYVTNGIVRKGALVKLIRNNNVIHEGKIKVLRRFKDDVKEVAAGFEC GILLDYSKEIYPESDIIHILEIVEEIRVIK >Mature_829_residues SGKIERTTLKLSDKLKLSSNIHQGTKFSLKKSVTTVEVRKSKKRKDINNIEQASVVLQNDNAYQDNESNNSLTIQEQISR MNALQNANICEKKEDIKEDTSDVNLQVTESTSVEKSESDDVTLEEESSKKVEEQVVEEAHDNTDTVSLNVVENVQEESQV DNQVESSNISDILQPKGIEEKKLKKYEKEHEEKKGNPKKGVSNNMYSKHVKLVIEEELEDNNKQVIQTHKSRKNRSTSSV KNKITRKVLIPKKITVQELASSMSERVKDVQHMLFQMGRRDIKPTDFLDSDHASVIVEAFNHTFKLVNDGKLEEDLYADG NDKELLPRAPVVTVMGHVDHGKTSLLDAIRKSNVADGEFKGITQHIGAYQIMLDGDKRITFIDTPGHEAFTAMRACGTNV TDIVVLVVAADDGIMPQTIESINHVKAANVAMIVAVNKIDKHDANIDKITNSLLNHGVVAESLGGDVIVVPVSAKERINL DQLKSSILLMAELLELKAVYDTRASGVVIESKVDRNCGVVATLIVQKGTLKAGDIIVVGHNSYGKVRNMFNSDGRSEKVA IPSMPVKVLGLNNVPNSGTNFIVVDSEKQARELISYRQELFNAELEANAKPKMDANSILACGVVDELNVILKCDVMGSVE AICYSISKITHEDIKLNVLYKGVGNVTKSDVLLAETSNSIILAFNVKTDASVKELAKQKCIEIKHYSVIYDIIDDVKKIL SSMLKPLQQEVQVGTLSIRKVFSSGSIGSVLGCYVTNGIVRKGALVKLIRNNNVIHEGKIKVLRRFKDDVKEVAAGFECG ILLDYSKEIYPESDIIHILEIVEEIRVIK
Specific function: One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 7
COG id: COG0532
COG function: function code J; Translation initiation factor 2 (IF-2; GTPase)
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IF-2 family
Homologues:
Organism=Homo sapiens, GI53729339, Length=524, Percent_Identity=42.9389312977099, Blast_Score=372, Evalue=1e-103, Organism=Homo sapiens, GI53729337, Length=524, Percent_Identity=42.9389312977099, Blast_Score=372, Evalue=1e-103, Organism=Homo sapiens, GI84043963, Length=514, Percent_Identity=27.8210116731518, Blast_Score=133, Evalue=6e-31, Organism=Escherichia coli, GI1789559, Length=591, Percent_Identity=46.0236886632826, Blast_Score=487, Evalue=1e-138, Organism=Escherichia coli, GI2367247, Length=231, Percent_Identity=30.7359307359307, Blast_Score=82, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71994658, Length=639, Percent_Identity=35.2112676056338, Blast_Score=326, Evalue=3e-89, Organism=Caenorhabditis elegans, GI212656558, Length=559, Percent_Identity=24.6869409660107, Blast_Score=114, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17557151, Length=216, Percent_Identity=28.2407407407407, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25141371, Length=129, Percent_Identity=37.2093023255814, Blast_Score=67, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324550, Length=632, Percent_Identity=38.1329113924051, Blast_Score=390, Evalue=1e-109, Organism=Saccharomyces cerevisiae, GI6319282, Length=483, Percent_Identity=26.7080745341615, Blast_Score=126, Evalue=1e-29, Organism=Drosophila melanogaster, GI28572034, Length=613, Percent_Identity=37.1941272430669, Blast_Score=359, Evalue=4e-99, Organism=Drosophila melanogaster, GI24656849, Length=518, Percent_Identity=27.2200772200772, Blast_Score=125, Evalue=1e-28, Organism=Drosophila melanogaster, GI160714833, Length=73, Percent_Identity=67.1232876712329, Blast_Score=111, Evalue=2e-24,
Paralogues:
None
Copy number: 1150 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): IF2_EHRCR (Q2GGQ8)
Other databases:
- EMBL: CP000236 - RefSeq: YP_507375.1 - ProteinModelPortal: Q2GGQ8 - STRING: Q2GGQ8 - GeneID: 3927066 - GenomeReviews: CP000236_GR - KEGG: ech:ECH_0563 - TIGR: ECH_0563 - eggNOG: COG0532 - HOGENOM: HBG635083 - ProtClustDB: PRK05306 - BioCyc: ECHA205920:ECH_0563-MONOMER - GO: GO:0005737 - HAMAP: MF_00100_B - InterPro: IPR006847 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000178 - InterPro: IPR015760 - InterPro: IPR023115 - InterPro: IPR004161 - InterPro: IPR009000 - Gene3D: G3DSA:3.40.50.10050 - PANTHER: PTHR23115:SF41 - TIGRFAMs: TIGR00487 - TIGRFAMs: TIGR00231
Pfam domain/function: PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; PF11987 IF-2; PF04760 IF2_N; SSF52156 TIF_IF2_dom3; SSF50447 Translat_factor
EC number: NA
Molecular weight: Translated: 91944; Mature: 91813
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: PS01176 IF2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGKIERTTLKLSDKLKLSSNIHQGTKFSLKKSVTTVEVRKSKKRKDINNIEQASVVLQN CCCCEEEEEEEECCCEECCCCCCCCCCEEHHHCCCHHHHHHHHHHCCCCCHHHHEEEEEC DNAYQDNESNNSLTIQEQISRMNALQNANICEKKEDIKEDTSDVNLQVTESTSVEKSESD CCCCCCCCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCC DVTLEEESSKKVEEQVVEEAHDNTDTVSLNVVENVQEESQVDNQVESSNISDILQPKGIE CCEECCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC EKKLKKYEKEHEEKKGNPKKGVSNNMYSKHVKLVIEEELEDNNKQVIQTHKSRKNRSTSS HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHEEEEHHHCCCCHHHHHHHHHHCCCCHHH VKNKITRKVLIPKKITVQELASSMSERVKDVQHMLFQMGRRDIKPTDFLDSDHASVIVEA HHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH FNHTFKLVNDGKLEEDLYADGNDKELLPRAPVVTVMGHVDHGKTSLLDAIRKSNVADGEF HHCCEEEECCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCHH KGITQHIGAYQIMLDGDKRITFIDTPGHEAFTAMRACGTNVTDIVVLVVAADDGIMPQTI HHHHHHCCEEEEEEECCCEEEEEECCCHHHHHHHHHHCCCCHHEEEEEEECCCCCCHHHH ESINHVKAANVAMIVAVNKIDKHDANIDKITNSLLNHGVVAESLGGDVIVVPVSAKERIN HHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEECCCHHCCC LDQLKSSILLMAELLELKAVYDTRASGVVIESKVDRNCGVVATLIVQKGTLKAGDIIVVG HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCCEEEEC HNSYGKVRNMFNSDGRSEKVAIPSMPVKVLGLNNVPNSGTNFIVVDSEKQARELISYRQE CCCCHHHHHHHCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHH LFNAELEANAKPKMDANSILACGVVDELNVILKCDVMGSVEAICYSISKITHEDIKLNVL HHCCCCCCCCCCCCCCCCEEEECCHHHCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEE YKGVGNVTKSDVLLAETSNSIILAFNVKTDASVKELAKQKCIEIKHYSVIYDIIDDVKKI EECCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSSMLKPLQQEVQVGTLSIRKVFSSGSIGSVLGCYVTNGIVRKGALVKLIRNNNVIHEGK HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEHHH IKVLRRFKDDVKEVAAGFECGILLDYSKEIYPESDIIHILEIVEEIRVIK HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SGKIERTTLKLSDKLKLSSNIHQGTKFSLKKSVTTVEVRKSKKRKDINNIEQASVVLQN CCCEEEEEEEECCCEECCCCCCCCCCEEHHHCCCHHHHHHHHHHCCCCCHHHHEEEEEC DNAYQDNESNNSLTIQEQISRMNALQNANICEKKEDIKEDTSDVNLQVTESTSVEKSESD CCCCCCCCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCC DVTLEEESSKKVEEQVVEEAHDNTDTVSLNVVENVQEESQVDNQVESSNISDILQPKGIE CCEECCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC EKKLKKYEKEHEEKKGNPKKGVSNNMYSKHVKLVIEEELEDNNKQVIQTHKSRKNRSTSS HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHEEEEHHHCCCCHHHHHHHHHHCCCCHHH VKNKITRKVLIPKKITVQELASSMSERVKDVQHMLFQMGRRDIKPTDFLDSDHASVIVEA HHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH FNHTFKLVNDGKLEEDLYADGNDKELLPRAPVVTVMGHVDHGKTSLLDAIRKSNVADGEF HHCCEEEECCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCHH KGITQHIGAYQIMLDGDKRITFIDTPGHEAFTAMRACGTNVTDIVVLVVAADDGIMPQTI HHHHHHCCEEEEEEECCCEEEEEECCCHHHHHHHHHHCCCCHHEEEEEEECCCCCCHHHH ESINHVKAANVAMIVAVNKIDKHDANIDKITNSLLNHGVVAESLGGDVIVVPVSAKERIN HHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEECCCHHCCC LDQLKSSILLMAELLELKAVYDTRASGVVIESKVDRNCGVVATLIVQKGTLKAGDIIVVG HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCCEEEEC HNSYGKVRNMFNSDGRSEKVAIPSMPVKVLGLNNVPNSGTNFIVVDSEKQARELISYRQE CCCCHHHHHHHCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHH LFNAELEANAKPKMDANSILACGVVDELNVILKCDVMGSVEAICYSISKITHEDIKLNVL HHCCCCCCCCCCCCCCCCEEEECCHHHCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEE YKGVGNVTKSDVLLAETSNSIILAFNVKTDASVKELAKQKCIEIKHYSVIYDIIDDVKKI EECCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSSMLKPLQQEVQVGTLSIRKVFSSGSIGSVLGCYVTNGIVRKGALVKLIRNNNVIHEGK HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEHHH IKVLRRFKDDVKEVAAGFECGILLDYSKEIYPESDIIHILEIVEEIRVIK HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; In phosphorus-containing anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA