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The map label for this gene is rbfA [H]

Identifier: 88658124

GI number: 88658124

Start: 571590

End: 571934

Strand: Direct

Name: rbfA [H]

Synonym: ECH_0564

Alternate gene names: 88658124

Gene position: 571590-571934 (Clockwise)

Preceding gene: 88657990

Following gene: 88658489

Centisome position: 48.59

GC content: 24.93

Gene sequence:

>345_bases
ATGATTTATAAATCTGAAAGTTTTAGGAATTTAAAAGTTGCTTCAGTATTGAATAGGGCGATATCTAGAGTATTAATGCA
AGATATTTGTTTGTTTAATAGTCATATAACTATATCTAAAGTAGAAGTGAGTAGTGATATAAGAGATGCTACTGTTTTTG
TTATAATTTCTCAAGAATGTTCAGATAAAGAAGCGCTTATAAAAGAATTAAATGACTCTTCTTATTTTATTAGAAAAGCA
ATATTTTCTTACGTAGATCTTAGGTATATACCTAGATTATATTTTAAGCTAGATTATTGTTTTGATAATTTGGTTAGAGT
AAATCAAATACTAGAATCTAAGTAA

Upstream 100 bases:

>100_bases
GGTTTGAATGTGGTATTTTGTTAGATTATTCAAAAGAAATATATCCAGAAAGTGATATAATTCATATATTAGAGATAGTA
GAAGAAATTAGAGTTATTAA

Downstream 100 bases:

>100_bases
TGCATTCTGCTGCTGCAGGTATTAAAAGCAATATATTAGAATATAGTAAAAAAGAATACTATTATATTCATTGTTTTACT
TTTTTTTCCTATTATATTTA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MIYKSESFRNLKVASVLNRAISRVLMQDICLFNSHITISKVEVSSDIRDATVFVIISQECSDKEALIKELNDSSYFIRKA
IFSYVDLRYIPRLYFKLDYCFDNLVRVNQILESK

Sequences:

>Translated_114_residues
MIYKSESFRNLKVASVLNRAISRVLMQDICLFNSHITISKVEVSSDIRDATVFVIISQECSDKEALIKELNDSSYFIRKA
IFSYVDLRYIPRLYFKLDYCFDNLVRVNQILESK
>Mature_114_residues
MIYKSESFRNLKVASVLNRAISRVLMQDICLFNSHITISKVEVSSDIRDATVFVIISQECSDKEALIKELNDSSYFIRKA
IFSYVDLRYIPRLYFKLDYCFDNLVRVNQILESK

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13357; Mature: 13357

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYKSESFRNLKVASVLNRAISRVLMQDICLFNSHITISKVEVSSDIRDATVFVIISQEC
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCC
SDKEALIKELNDSSYFIRKAIFSYVDLRYIPRLYFKLDYCFDNLVRVNQILESK
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIYKSESFRNLKVASVLNRAISRVLMQDICLFNSHITISKVEVSSDIRDATVFVIISQEC
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCC
SDKEALIKELNDSSYFIRKAIFSYVDLRYIPRLYFKLDYCFDNLVRVNQILESK
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA