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The map label for this gene is omp-1S [H]

Identifier: 88657920

GI number: 88657920

Start: 1154038

End: 1154913

Strand: Direct

Name: omp-1S [H]

Synonym: ECH_1132

Alternate gene names: 88657920

Gene position: 1154038-1154913 (Clockwise)

Preceding gene: 88658357

Following gene: 88657728

Centisome position: 98.11

GC content: 32.53

Gene sequence:

>876_bases
ATGAATAAAAAAAACAAGTTTATTATAGCTACAGCATTGGTATATTTACTGTCATTACCTAGTGTATCGTTTTCAGAGGT
TACAAACAGCAGTATTAAAAAACACTCTGGGTTATATATTAGTGGACAATACAAACCAAGTGTTTCTGTTTTTAGTAGTT
TCTCAATTAAAGAAACTAACACTATCACAAAAAATCTTATAGCGTTAAAAAAAGATATTAACTCTCTTGAAGTTAACGCC
GATGCTAGTCAAGGTATTAGTCATCCAGGAAATTTTACTATACCTTATATAGCAGCATTTGAAGATAATGCTTTTAATTT
CAACGGTGCTATTGGTTACATTACTGAAGGTCTAAGGATTGAAATAGAAGGTTCCTATGAAGAATTTGATGCTAAAAACC
CTGGAGGTTATGGTCTAAATGATGCCTTTCGGTACTTTGCTTTAGCACGTGATATGGAAAGCAACAAGTTCCAACCAAAA
GCACAAAGCTCACAAAAAGTATTTCACACTGTAATGAAGAGTGATGGGTTATCTATAATATCTATCATGGTTAACGGCTG
TTATGATTTTTCTTCGGATAATTTATTAGTATCACCTTATATATGTGGAGGTATAGGTGTGGATGCAATAGAATTTTTTG
ACGCATTACACATTAAACTTGCGTGCCAAAGCAAATTAGGCATCACTTATCAATTATCTTATAATATCAGCTTATTTGCT
GATGGATATTATCATCAAGTAATAGGTAACCAATTCAGAAATTTAAACGTTCAACATGTAGCTGAACTTAATGATGCACC
TAAAGTTACATCTGCAGTTGCCACACTTAATGTTGGATATTTCGGCGCTGAAGTTGGAGTAAGATTTATATTTTAA

Upstream 100 bases:

>100_bases
TAAGTTCACATCTGCAGTTGCTACACTCAATGTTGGGTACTTTGGTGGCGAAATTGGAGTAAGATTTATATTTTAATTAT
AACTAAATACGGAAGATCTA

Downstream 100 bases:

>100_bases
TTACAATTAAATACGGAAAAGTTCATGAATCACAAAAGTATGCTCTTTACAATAGGTACAGCTTTGATATCCTTATTGTC
ATTACCTAATGTATCATTCT

Product: major outer membrane protein OMP-1S

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MNKKNKFIIATALVYLLSLPSVSFSEVTNSSIKKHSGLYISGQYKPSVSVFSSFSIKETNTITKNLIALKKDINSLEVNA
DASQGISHPGNFTIPYIAAFEDNAFNFNGAIGYITEGLRIEIEGSYEEFDAKNPGGYGLNDAFRYFALARDMESNKFQPK
AQSSQKVFHTVMKSDGLSIISIMVNGCYDFSSDNLLVSPYICGGIGVDAIEFFDALHIKLACQSKLGITYQLSYNISLFA
DGYYHQVIGNQFRNLNVQHVAELNDAPKVTSAVATLNVGYFGAEVGVRFIF

Sequences:

>Translated_291_residues
MNKKNKFIIATALVYLLSLPSVSFSEVTNSSIKKHSGLYISGQYKPSVSVFSSFSIKETNTITKNLIALKKDINSLEVNA
DASQGISHPGNFTIPYIAAFEDNAFNFNGAIGYITEGLRIEIEGSYEEFDAKNPGGYGLNDAFRYFALARDMESNKFQPK
AQSSQKVFHTVMKSDGLSIISIMVNGCYDFSSDNLLVSPYICGGIGVDAIEFFDALHIKLACQSKLGITYQLSYNISLFA
DGYYHQVIGNQFRNLNVQHVAELNDAPKVTSAVATLNVGYFGAEVGVRFIF
>Mature_291_residues
MNKKNKFIIATALVYLLSLPSVSFSEVTNSSIKKHSGLYISGQYKPSVSVFSSFSIKETNTITKNLIALKKDINSLEVNA
DASQGISHPGNFTIPYIAAFEDNAFNFNGAIGYITEGLRIEIEGSYEEFDAKNPGGYGLNDAFRYFALARDMESNKFQPK
AQSSQKVFHTVMKSDGLSIISIMVNGCYDFSSDNLLVSPYICGGIGVDAIEFFDALHIKLACQSKLGITYQLSYNISLFA
DGYYHQVIGNQFRNLNVQHVAELNDAPKVTSAVATLNVGYFGAEVGVRFIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 31975; Mature: 31975

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKNKFIIATALVYLLSLPSVSFSEVTNSSIKKHSGLYISGQYKPSVSVFSSFSIKETN
CCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHEECCCCCCC
TITKNLIALKKDINSLEVNADASQGISHPGNFTIPYIAAFEDNAFNFNGAIGYITEGLRI
HHHHHHHHHHHCCCEEEECCCHHCCCCCCCCCCEEEEEEEECCCEEECCEEEEEECCEEE
EIEGSYEEFDAKNPGGYGLNDAFRYFALARDMESNKFQPKAQSSQKVFHTVMKSDGLSII
EEECCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
SIMVNGCYDFSSDNLLVSPYICGGIGVDAIEFFDALHIKLACQSKLGITYQLSYNISLFA
EEEECCCEECCCCCEEECCEEECCCCHHHHHHHHHHEEEEEECCCCCEEEEEEEEEEEEE
DGYYHQVIGNQFRNLNVQHVAELNDAPKVTSAVATLNVGYFGAEVGVRFIF
CCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHEEECCEEECCCCEEEEC
>Mature Secondary Structure
MNKKNKFIIATALVYLLSLPSVSFSEVTNSSIKKHSGLYISGQYKPSVSVFSSFSIKETN
CCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHEECCCCCCC
TITKNLIALKKDINSLEVNADASQGISHPGNFTIPYIAAFEDNAFNFNGAIGYITEGLRI
HHHHHHHHHHHCCCEEEECCCHHCCCCCCCCCCEEEEEEEECCCEEECCEEEEEECCEEE
EIEGSYEEFDAKNPGGYGLNDAFRYFALARDMESNKFQPKAQSSQKVFHTVMKSDGLSII
EEECCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
SIMVNGCYDFSSDNLLVSPYICGGIGVDAIEFFDALHIKLACQSKLGITYQLSYNISLFA
EEEECCCEECCCCCEEECCEEECCCCHHHHHHHHHHEEEEEECCCCCEEEEEEEEEEEEE
DGYYHQVIGNQFRNLNVQHVAELNDAPKVTSAVATLNVGYFGAEVGVRFIF
CCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHEEECCEEECCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]