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The map label for this gene is omp-1H [H]

Identifier: 88657728

GI number: 88657728

Start: 1154938

End: 1155834

Strand: Direct

Name: omp-1H [H]

Synonym: ECH_1133

Alternate gene names: 88657728

Gene position: 1154938-1155834 (Clockwise)

Preceding gene: 88657920

Following gene: 88658596

Centisome position: 98.19

GC content: 32.89

Gene sequence:

>897_bases
ATGAATCACAAAAGTATGCTCTTTACAATAGGTACAGCTTTGATATCCTTATTGTCATTACCTAATGTATCATTCTCAGG
AATCATAAATAACAATGCTAACAATTTAGGTATATACATTAGTGGGCAATATAAACCCAGTGTTTCTGTTTTTAGCAATT
TCTCAGTAAAAGAAACTAACTTCACTACACAACAGTTAGTAGCACTTAAAAAAGATATTGATTCTGTTGACATTAGTACC
AATGCTGATAGCGGTATTAATAATCCGCAGAATTTCACTATCCCTTATATACCAAAATTTCAAGACAATGCTGCTAGTTT
TAGTGGAGCACTTGGATTCTTCTACGCTAGAGGTTTAAGACTTGAAATGGAAGGTTCCTATGAAGAATTTGATGTTAAAA
ACCCTGGAGGATATACAAAAGTAAAAGATGCATATCGTTACTTTGCCCTGGCACGTGAGATGCAATCTGGTCAAACTTGC
CCTAAACACAAAGAAACATCAGGTATTCAACCTCACGGTATTTATCACACTGTTATGAGGAATGATGGGGTATCTATTTC
ATCTGTCATAATCAATGGTTGTTATAACTTTACTTTAAGTAATCTACCAATATCACCTTACATGTGTGTAGGTATGGGAA
TAGATGCTATACAATTTTTTGATTCACTACATATTAAGTTTGCACATCAAAGTAAGTTAGGTATTACTTACCCACTATCT
TCAAATGTTCATTTATTTGCTGATAGCTATTATCATAAAGTAATAGGTAATAAATTTAAAAATCTAAGGGTTCAACACGT
TTATGAATTACAACAGGTACCTAAAGTTACATCTGCTGTTGCTACACTTGATATTGGGTATTTTGGTGGTGAAGTTGGAG
TAAGGTTTATACTTTAA

Upstream 100 bases:

>100_bases
TAAAGTTACATCTGCAGTTGCCACACTTAATGTTGGATATTTCGGCGCTGAAGTTGGAGTAAGATTTATATTTTAATTAC
AATTAAATACGGAAAAGTTC

Downstream 100 bases:

>100_bases
TTATAACTAAACACGGAAAATTTCATGAAGAAGAAAAATCAATTTATCACAATAAGTACAATATTAGTATGTTTATTGTC
ATTATCTAATGCATCACTTT

Product: major outer membrane protein OMP-1H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNHKSMLFTIGTALISLLSLPNVSFSGIINNNANNLGIYISGQYKPSVSVFSNFSVKETNFTTQQLVALKKDIDSVDIST
NADSGINNPQNFTIPYIPKFQDNAASFSGALGFFYARGLRLEMEGSYEEFDVKNPGGYTKVKDAYRYFALAREMQSGQTC
PKHKETSGIQPHGIYHTVMRNDGVSISSVIINGCYNFTLSNLPISPYMCVGMGIDAIQFFDSLHIKFAHQSKLGITYPLS
SNVHLFADSYYHKVIGNKFKNLRVQHVYELQQVPKVTSAVATLDIGYFGGEVGVRFIL

Sequences:

>Translated_298_residues
MNHKSMLFTIGTALISLLSLPNVSFSGIINNNANNLGIYISGQYKPSVSVFSNFSVKETNFTTQQLVALKKDIDSVDIST
NADSGINNPQNFTIPYIPKFQDNAASFSGALGFFYARGLRLEMEGSYEEFDVKNPGGYTKVKDAYRYFALAREMQSGQTC
PKHKETSGIQPHGIYHTVMRNDGVSISSVIINGCYNFTLSNLPISPYMCVGMGIDAIQFFDSLHIKFAHQSKLGITYPLS
SNVHLFADSYYHKVIGNKFKNLRVQHVYELQQVPKVTSAVATLDIGYFGGEVGVRFIL
>Mature_298_residues
MNHKSMLFTIGTALISLLSLPNVSFSGIINNNANNLGIYISGQYKPSVSVFSNFSVKETNFTTQQLVALKKDIDSVDIST
NADSGINNPQNFTIPYIPKFQDNAASFSGALGFFYARGLRLEMEGSYEEFDVKNPGGYTKVKDAYRYFALAREMQSGQTC
PKHKETSGIQPHGIYHTVMRNDGVSISSVIINGCYNFTLSNLPISPYMCVGMGIDAIQFFDSLHIKFAHQSKLGITYPLS
SNVHLFADSYYHKVIGNKFKNLRVQHVYELQQVPKVTSAVATLDIGYFGGEVGVRFIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 33027; Mature: 33027

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHKSMLFTIGTALISLLSLPNVSFSGIINNNANNLGIYISGQYKPSVSVFSNFSVKETN
CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCCHHHHCCCEEECCC
FTTQQLVALKKDIDSVDISTNADSGINNPQNFTIPYIPKFQDNAASFSGALGFFYARGLR
CHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEE
LEMEGSYEEFDVKNPGGYTKVKDAYRYFALAREMQSGQTCPKHKETSGIQPHGIYHTVMR
EEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEC
NDGVSISSVIINGCYNFTLSNLPISPYMCVGMGIDAIQFFDSLHIKFAHQSKLGITYPLS
CCCCCHHHHHEEHHHEEEECCCCCCCEEEECCCHHHHHHHHHHEEEEEECCCCEEEEECC
SNVHLFADSYYHKVIGNKFKNLRVQHVYELQQVPKVTSAVATLDIGYFGGEVGVRFIL
CCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHEEEEEEECCCCCEEEEC
>Mature Secondary Structure
MNHKSMLFTIGTALISLLSLPNVSFSGIINNNANNLGIYISGQYKPSVSVFSNFSVKETN
CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCCHHHHCCCEEECCC
FTTQQLVALKKDIDSVDISTNADSGINNPQNFTIPYIPKFQDNAASFSGALGFFYARGLR
CHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEE
LEMEGSYEEFDVKNPGGYTKVKDAYRYFALAREMQSGQTCPKHKETSGIQPHGIYHTVMR
EEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEC
NDGVSISSVIINGCYNFTLSNLPISPYMCVGMGIDAIQFFDSLHIKFAHQSKLGITYPLS
CCCCCHHHHHEEHHHEEEECCCCCCCEEEECCCHHHHHHHHHHEEEEEECCCCEEEEECC
SNVHLFADSYYHKVIGNKFKNLRVQHVYELQQVPKVTSAVATLDIGYFGGEVGVRFIL
CCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHEEEEEEECCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]