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The map label for this gene is 88608818

Identifier: 88608818

GI number: 88608818

Start: 480515

End: 481075

Strand: Direct

Name: 88608818

Synonym: NSE_0551

Alternate gene names: NA

Gene position: 480515-481075 (Clockwise)

Preceding gene: 88608120

Following gene: 88608872

Centisome position: 55.94

GC content: 36.01

Gene sequence:

>561_bases
ATGATCAATAAAATCGTTTTTGTTTTTAAATTGCTGAGTGTTGCCTTGCTTTTTGGAATCTCATATCAAGCAGAAGGATT
CAACAAAGAAATTACGACCTCACAAATAGACATAGGTGGAACGTTTAAACTAACCGATCAGAATGGCGATCAAGTCACGA
ACAACATACTAAAAGGGAAATACACTCTCGTCCTTTTTGGCTTTAGTAGATGCCCGCATATTTGCCCAGGACAATTAACC
CTTTTGGAAAAAACGCTTGATGCTTTCCCAAAACTTCAGGCACTTTTTATTACTCTAGATCCCGCAAATGATACAGTAGA
AGTTCTAAATAAATTTAGTCGCTCATTTCACAAGCGAATACTCATGCTTACAGGTCCGAATGAGATGATAGAAAAAATTG
CCAACGATTATAAAGTTTATGTAGCAGCGAATGAGGATCCTGATAAATTCAATCATTCAGCCCTTATGTATCTTATGGGA
CTAGATGGTCGTTATATAAGTCATATAGCACCTCGTAGTGAAGATGAATTACTCGCATTTATATATCACCATACAATATA
A

Upstream 100 bases:

>100_bases
CCTTTTTACCTATATTATCAGCGCTGATGATACTTTTTTTTACTTTAACAAAAATCTCAGCTATAAAAGAAATAAGCTGT
ATGCTCATGGTAGGAAAAAG

Downstream 100 bases:

>100_bases
TTCGGTTGGGCGTAGTTTTACTTTTTACTCAGTTAATTGGACTTCTACATATACACGCTTGCCCGTTTCATCTTTTCGAG
ATTCGCTTTTGAAAGCGGGA

Product: major surface protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MINKIVFVFKLLSVALLFGISYQAEGFNKEITTSQIDIGGTFKLTDQNGDQVTNNILKGKYTLVLFGFSRCPHICPGQLT
LLEKTLDAFPKLQALFITLDPANDTVEVLNKFSRSFHKRILMLTGPNEMIEKIANDYKVYVAANEDPDKFNHSALMYLMG
LDGRYISHIAPRSEDELLAFIYHHTI

Sequences:

>Translated_186_residues
MINKIVFVFKLLSVALLFGISYQAEGFNKEITTSQIDIGGTFKLTDQNGDQVTNNILKGKYTLVLFGFSRCPHICPGQLT
LLEKTLDAFPKLQALFITLDPANDTVEVLNKFSRSFHKRILMLTGPNEMIEKIANDYKVYVAANEDPDKFNHSALMYLMG
LDGRYISHIAPRSEDELLAFIYHHTI
>Mature_186_residues
MINKIVFVFKLLSVALLFGISYQAEGFNKEITTSQIDIGGTFKLTDQNGDQVTNNILKGKYTLVLFGFSRCPHICPGQLT
LLEKTLDAFPKLQALFITLDPANDTVEVLNKFSRSFHKRILMLTGPNEMIEKIANDYKVYVAANEDPDKFNHSALMYLMG
LDGRYISHIAPRSEDELLAFIYHHTI

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=158, Percent_Identity=32.2784810126582, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI281182727, Length=162, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI281182722, Length=162, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI281182716, Length=162, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI153791313, Length=162, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17531419, Length=166, Percent_Identity=26.5060240963855, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6319498, Length=151, Percent_Identity=37.7483443708609, Blast_Score=101, Evalue=6e-23,
Organism=Saccharomyces cerevisiae, GI6319511, Length=149, Percent_Identity=36.9127516778523, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI19920710, Length=155, Percent_Identity=34.8387096774194, Blast_Score=102, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21050; Mature: 21050

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKIVFVFKLLSVALLFGISYQAEGFNKEITTSQIDIGGTFKLTDQNGDQVTNNILKGK
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHCCE
YTLVLFGFSRCPHICPGQLTLLEKTLDAFPKLQALFITLDPANDTVEVLNKFSRSFHKRI
EEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHEE
LMLTGPNEMIEKIANDYKVYVAANEDPDKFNHSALMYLMGLDGRYISHIAPRSEDELLAF
EEEECCHHHHHHHCCCEEEEEEECCCCCHHCCCEEEEEECCCCHHHHHCCCCCCCHHEEE
IYHHTI
EEECCC
>Mature Secondary Structure
MINKIVFVFKLLSVALLFGISYQAEGFNKEITTSQIDIGGTFKLTDQNGDQVTNNILKGK
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHCCE
YTLVLFGFSRCPHICPGQLTLLEKTLDAFPKLQALFITLDPANDTVEVLNKFSRSFHKRI
EEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHEE
LMLTGPNEMIEKIANDYKVYVAANEDPDKFNHSALMYLMGLDGRYISHIAPRSEDELLAF
EEEECCHHHHHHHCCCEEEEEEECCCCCHHCCCEEEEEECCCCHHHHHCCCCCCCHHEEE
IYHHTI
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA