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The map label for this gene is rpe

Identifier: 88608693

GI number: 88608693

Start: 276543

End: 277205

Strand: Direct

Name: rpe

Synonym: NSE_0336

Alternate gene names: 88608693

Gene position: 276543-277205 (Clockwise)

Preceding gene: 88608613

Following gene: 88608622

Centisome position: 32.19

GC content: 42.23

Gene sequence:

>663_bases
TTGCATCGGATGATTAAGATCTCCCCTTCCTTACTGTCAGCTGATTTTTTAAATCTACATTCTGATGTGAAACTGTTAGA
AGAGTCAGGGGCCGACTCGATTCACATTGATGTGATGGATGGGCACTTTGTGCCGAATTTGACTTTTGGACCTGTCATAA
TAGAGCAAATAAAGAGAATCACATCAATTCCTATTGAAGTACACCTAATGATCCTGAATGCTGAGCAGACTTTTCAGGAC
TATATCAATGCAGGAGCGGACACCATTTTTGTGCACAGTGAAGCATGTTTTCACTTGGATAGGATGGTTAATGCAATAAA
AAGTCAGTCTGTCAAAGTAGGTGTTGCGTTAAACCCAGCTACTTCTGAGGAAGCACTAAGATATCTATACAACTCGATAG
ATGCGGTTTTGATCATGACTGTGAATCCAGGTTTCGCATCTCAGGTTTTTCTTACATCCCAGCTTGCTAAAGTGAGTTTG
GTGCGACGTCGCATAGTGGAACTTGGTGTTGATGTAACCCTTGCTGTTGATGGTGGAATAAATGCCGAAACAGCAAATCT
TGTAGTCTCCGCTGGTGCCGGGACCCTTGTTACAGGGTCGTATCTCTTTTCTAATAGAAAAAATCTTGGCGCTAAGATTG
CATCATTACGCGTGCTTGCATGA

Upstream 100 bases:

>100_bases
ATAGTGGTAGTTGTTGTACAGTAGTGTCGATATGTGACTGTTTAACTTTGAAATTGTGCTTTTCCTGACGTACATTTTAG
AATCTACCTAGTTTAATCCT

Downstream 100 bases:

>100_bases
TTTTCATCTGAGTTGGATTTTACATATCTTGATGGCAGAACGTAGTTTCTACGCAAGTGCGCGCACGTTATTTTGAGAAC
TGTGCTTTATTATAGTGTTG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MHRMIKISPSLLSADFLNLHSDVKLLEESGADSIHIDVMDGHFVPNLTFGPVIIEQIKRITSIPIEVHLMILNAEQTFQD
YINAGADTIFVHSEACFHLDRMVNAIKSQSVKVGVALNPATSEEALRYLYNSIDAVLIMTVNPGFASQVFLTSQLAKVSL
VRRRIVELGVDVTLAVDGGINAETANLVVSAGAGTLVTGSYLFSNRKNLGAKIASLRVLA

Sequences:

>Translated_220_residues
MHRMIKISPSLLSADFLNLHSDVKLLEESGADSIHIDVMDGHFVPNLTFGPVIIEQIKRITSIPIEVHLMILNAEQTFQD
YINAGADTIFVHSEACFHLDRMVNAIKSQSVKVGVALNPATSEEALRYLYNSIDAVLIMTVNPGFASQVFLTSQLAKVSL
VRRRIVELGVDVTLAVDGGINAETANLVVSAGAGTLVTGSYLFSNRKNLGAKIASLRVLA
>Mature_220_residues
MHRMIKISPSLLSADFLNLHSDVKLLEESGADSIHIDVMDGHFVPNLTFGPVIIEQIKRITSIPIEVHLMILNAEQTFQD
YINAGADTIFVHSEACFHLDRMVNAIKSQSVKVGVALNPATSEEALRYLYNSIDAVLIMTVNPGFASQVFLTSQLAKVSL
VRRRIVELGVDVTLAVDGGINAETANLVVSAGAGTLVTGSYLFSNRKNLGAKIASLRVLA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=198, Percent_Identity=38.3838383838384, Blast_Score=145, Evalue=4e-35,
Organism=Homo sapiens, GI219879828, Length=198, Percent_Identity=37.3737373737374, Blast_Score=137, Evalue=5e-33,
Organism=Homo sapiens, GI24307923, Length=155, Percent_Identity=32.258064516129, Blast_Score=79, Evalue=3e-15,
Organism=Escherichia coli, GI1789788, Length=200, Percent_Identity=42.5, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1790523, Length=223, Percent_Identity=35.8744394618834, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI1790754, Length=199, Percent_Identity=30.6532663316583, Blast_Score=99, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17552948, Length=199, Percent_Identity=38.1909547738693, Blast_Score=139, Evalue=8e-34,
Organism=Saccharomyces cerevisiae, GI6322341, Length=216, Percent_Identity=36.1111111111111, Blast_Score=142, Evalue=3e-35,
Organism=Drosophila melanogaster, GI24586301, Length=196, Percent_Identity=36.2244897959184, Blast_Score=136, Evalue=9e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23815; Mature: 23815

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRMIKISPSLLSADFLNLHSDVKLLEESGADSIHIDVMDGHFVPNLTFGPVIIEQIKRI
CCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
TSIPIEVHLMILNAEQTFQDYINAGADTIFVHSEACFHLDRMVNAIKSQSVKVGVALNPA
HCCCEEEEEEEECCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEECCC
TSEEALRYLYNSIDAVLIMTVNPGFASQVFLTSQLAKVSLVRRRIVELGVDVTLAVDGGI
CHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
NAETANLVVSAGAGTLVTGSYLFSNRKNLGAKIASLRVLA
CCCEEEEEEECCCCCEEECHHHHCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MHRMIKISPSLLSADFLNLHSDVKLLEESGADSIHIDVMDGHFVPNLTFGPVIIEQIKRI
CCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
TSIPIEVHLMILNAEQTFQDYINAGADTIFVHSEACFHLDRMVNAIKSQSVKVGVALNPA
HCCCEEEEEEEECCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEECCC
TSEEALRYLYNSIDAVLIMTVNPGFASQVFLTSQLAKVSLVRRRIVELGVDVTLAVDGGI
CHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
NAETANLVVSAGAGTLVTGSYLFSNRKNLGAKIASLRVLA
CCCEEEEEEECCCCCEEECHHHHCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]