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The map label for this gene is virB10

Identifier: 88608478

GI number: 88608478

Start: 661528

End: 662901

Strand: Reverse

Name: virB10

Synonym: NSE_0741

Alternate gene names: 88608478

Gene position: 662901-661528 (Counterclockwise)

Preceding gene: 88608571

Following gene: 88608308

Centisome position: 77.17

GC content: 45.2

Gene sequence:

>1374_bases
ATGCGCGGAAATAAGGAAAACAACGATTTGGAAGAGTTTAGTATAGGTGATGAGTCTGTAGAGGTTAGTGACAGAGGTTC
CGGGATACAAGGTGGGAGCATTAAAAAGAAGCTCATCTATATTTTAATTGTTGTAGTTGGGTTTTTTTTTGCATATAAGT
TTTTTTCCAGCGAGTCACAGAAGGAAGATACACATATTCCAGCGAGAGAAACTCAGGTTGAAGAGAGGGTCGTTTCCGAT
AAGATAAAAACCGATACGAAGGAAGGTTTTCTCGTCCCAAAGGATGATGCGGCGCTTGTGCTTCTTCCGCCAAAGATATC
TGATCTTCCAAAGTTACCTGCAATACCTGTTCCTGCTATACCAGAGAAGCCTCCTGTTGTTCCAACTAAGCCCGGGGCTG
GGCCGTCTCTTCCGTCATTTTTTCCTCAGCCACCTGGCTCTGCATCCAGCGCTATGGATCCACCTGGTAAGGTGAGTAGT
GGCATAAATAAATACAATAGAAGCACCCCTATGATTGCCTTTGGAGGAGGGGGAGTCACCTCCTCGGAAGGACAGTCCAG
TGGGATTAGTATTTCCGATCCGGCTTCTCTTCTTGATCCGAGTAAGTTAGGTGAGTTGAGGAGGTCGCTTCAACAGAGAG
ATACGACTGCTCCTGAAGATAAGGAATTGACGAGGACGCCTGGGCAGATAGTTGCTGGGTATGTTGGGGATTTGGATTAT
GTACTCACAGAGGGCAAAATGTTGGATGCTGTTCTCGAGACAGCTGTAAACACCGATCTAAAAGCGAAAGTGCGTGCGGT
CGTGAGTAGGGATGTCTTTTCTGAATCGGGTAACCAGATTTTAATTCCTAAGGGCTCAAGACTAATAGGATCATACTCAA
CAGACATTTCCTTTACGCAATCTAGAGTTGATATAACGTGGTCGCGCATTATTCTCCCTAACGGAATAGATATAAATCTA
GGTGGCTTTGATGGTGTGGATTCGCTTGGTAGAGCTGGGGTTAGAGGAGCTGTGAATAACAAAGTTTCTAATGTTATGAG
CACATCTATCCTCCTTGCTACAGCTAGAGTAGCAAGTGGTATGATAGTGGATAAGATAATGGGAACGAATAAAAGTCAGA
TGAACGTTCCCAAAAACAGGCCGTCGCTGAAGGATGAAAATGCTGATGAATCGAAGGTGAAAGGTTCTCCGGGTGCGATT
ATTGCCATGCAAGCTATTCAAGATGCCTCAAAGCAGGTAACGGATTATGTCAAGCGCACGGCCGACGTGAACCCAACGCT
TACTGTGAACCAGGGTACAAGGCTTAAGGTATTCGTAAATCAAGACGTGGTTTTTCCAAGAGCCGCGTTTCAAGAGTATA
AGGTGCTTAACTGA

Upstream 100 bases:

>100_bases
TAGGGATTATATGGTGATAGAAGGTGTGCATAAGAAATTGCATCTACGTTACAAGGATTCCGTGTTAGAAGTGGTGAATA
ATGATTTGGGGTAGTTGGTT

Downstream 100 bases:

>100_bases
TTCGTATGCAATACACAGCCCTGAATAAATACCTGGAGCCCTTGGATGCACTATTTCAGGATAGTGATGTCAACGAGATC
TCGATCAATAAACCCGGGGA

Product: type IV secretion system protein VirB10

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MRGNKENNDLEEFSIGDESVEVSDRGSGIQGGSIKKKLIYILIVVVGFFFAYKFFSSESQKEDTHIPARETQVEERVVSD
KIKTDTKEGFLVPKDDAALVLLPPKISDLPKLPAIPVPAIPEKPPVVPTKPGAGPSLPSFFPQPPGSASSAMDPPGKVSS
GINKYNRSTPMIAFGGGGVTSSEGQSSGISISDPASLLDPSKLGELRRSLQQRDTTAPEDKELTRTPGQIVAGYVGDLDY
VLTEGKMLDAVLETAVNTDLKAKVRAVVSRDVFSESGNQILIPKGSRLIGSYSTDISFTQSRVDITWSRIILPNGIDINL
GGFDGVDSLGRAGVRGAVNNKVSNVMSTSILLATARVASGMIVDKIMGTNKSQMNVPKNRPSLKDENADESKVKGSPGAI
IAMQAIQDASKQVTDYVKRTADVNPTLTVNQGTRLKVFVNQDVVFPRAAFQEYKVLN

Sequences:

>Translated_457_residues
MRGNKENNDLEEFSIGDESVEVSDRGSGIQGGSIKKKLIYILIVVVGFFFAYKFFSSESQKEDTHIPARETQVEERVVSD
KIKTDTKEGFLVPKDDAALVLLPPKISDLPKLPAIPVPAIPEKPPVVPTKPGAGPSLPSFFPQPPGSASSAMDPPGKVSS
GINKYNRSTPMIAFGGGGVTSSEGQSSGISISDPASLLDPSKLGELRRSLQQRDTTAPEDKELTRTPGQIVAGYVGDLDY
VLTEGKMLDAVLETAVNTDLKAKVRAVVSRDVFSESGNQILIPKGSRLIGSYSTDISFTQSRVDITWSRIILPNGIDINL
GGFDGVDSLGRAGVRGAVNNKVSNVMSTSILLATARVASGMIVDKIMGTNKSQMNVPKNRPSLKDENADESKVKGSPGAI
IAMQAIQDASKQVTDYVKRTADVNPTLTVNQGTRLKVFVNQDVVFPRAAFQEYKVLN
>Mature_457_residues
MRGNKENNDLEEFSIGDESVEVSDRGSGIQGGSIKKKLIYILIVVVGFFFAYKFFSSESQKEDTHIPARETQVEERVVSD
KIKTDTKEGFLVPKDDAALVLLPPKISDLPKLPAIPVPAIPEKPPVVPTKPGAGPSLPSFFPQPPGSASSAMDPPGKVSS
GINKYNRSTPMIAFGGGGVTSSEGQSSGISISDPASLLDPSKLGELRRSLQQRDTTAPEDKELTRTPGQIVAGYVGDLDY
VLTEGKMLDAVLETAVNTDLKAKVRAVVSRDVFSESGNQILIPKGSRLIGSYSTDISFTQSRVDITWSRIILPNGIDINL
GGFDGVDSLGRAGVRGAVNNKVSNVMSTSILLATARVASGMIVDKIMGTNKSQMNVPKNRPSLKDENADESKVKGSPGAI
IAMQAIQDASKQVTDYVKRTADVNPTLTVNQGTRLKVFVNQDVVFPRAAFQEYKVLN

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 48951; Mature: 48951

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS00287 CYSTATIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGNKENNDLEEFSIGDESVEVSDRGSGIQGGSIKKKLIYILIVVVGFFFAYKFFSSESQ
CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
KEDTHIPARETQVEERVVSDKIKTDTKEGFLVPKDDAALVLLPPKISDLPKLPAIPVPAI
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCC
PEKPPVVPTKPGAGPSLPSFFPQPPGSASSAMDPPGKVSSGINKYNRSTPMIAFGGGGVT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCC
SSEGQSSGISISDPASLLDPSKLGELRRSLQQRDTTAPEDKELTRTPGQIVAGYVGDLDY
CCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHCCHHH
VLTEGKMLDAVLETAVNTDLKAKVRAVVSRDVFSESGNQILIPKGSRLIGSYSTDISFTQ
HHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCEEEC
SRVDITWSRIILPNGIDINLGGFDGVDSLGRAGVRGAVNNKVSNVMSTSILLATARVASG
CEEEEEEEEEEECCCCEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
MIVDKIMGTNKSQMNVPKNRPSLKDENADESKVKGSPGAIIAMQAIQDASKQVTDYVKRT
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHH
ADVNPTLTVNQGTRLKVFVNQDVVFPRAAFQEYKVLN
CCCCCEEEECCCCEEEEEECCCEECCHHHHHHHCCCC
>Mature Secondary Structure
MRGNKENNDLEEFSIGDESVEVSDRGSGIQGGSIKKKLIYILIVVVGFFFAYKFFSSESQ
CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
KEDTHIPARETQVEERVVSDKIKTDTKEGFLVPKDDAALVLLPPKISDLPKLPAIPVPAI
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCC
PEKPPVVPTKPGAGPSLPSFFPQPPGSASSAMDPPGKVSSGINKYNRSTPMIAFGGGGVT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCC
SSEGQSSGISISDPASLLDPSKLGELRRSLQQRDTTAPEDKELTRTPGQIVAGYVGDLDY
CCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHCCHHH
VLTEGKMLDAVLETAVNTDLKAKVRAVVSRDVFSESGNQILIPKGSRLIGSYSTDISFTQ
HHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCEEEC
SRVDITWSRIILPNGIDINLGGFDGVDSLGRAGVRGAVNNKVSNVMSTSILLATARVASG
CEEEEEEEEEEECCCCEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
MIVDKIMGTNKSQMNVPKNRPSLKDENADESKVKGSPGAIIAMQAIQDASKQVTDYVKRT
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHH
ADVNPTLTVNQGTRLKVFVNQDVVFPRAAFQEYKVLN
CCCCCEEEECCCCEEEEEECCCEECCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]