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The map label for this gene is virB9-2

Identifier: 88608571

GI number: 88608571

Start: 662908

End: 663630

Strand: Reverse

Name: virB9-2

Synonym: NSE_0742

Alternate gene names: 88608571

Gene position: 663630-662908 (Counterclockwise)

Preceding gene: 88608885

Following gene: 88608478

Centisome position: 77.26

GC content: 41.36

Gene sequence:

>723_bases
ATGATCATTCGTGAGTTGTTTTTTGTTGTGTTTTTCGCACTTTTCTGCATACGAGCATATGCCCTCGAGCATGATCCGCG
TGTGCGAACTCTCGTCTATTCGGAGAGCACAATCTTCCAGGTGGATACGAGTTATGGATATCAGTCTTTCATCAAGTTTT
CTGATAAGGAGAGAATCAAAACAATAGCTCTTGGCAACAGTATTGGTTGGAGTGTAAATCCTGTGGGTGAAAAAATATTC
CTGAGACCTCTTGAAAAGGGACTTTCAACAAACATGGTTGTAGTTACTGATAAGCGCACTTACGTGTTTGATTTGCTTAG
TGCCTCCGAAGAGGACGAGAAGAAAAGAAAAGTGAATGAGACTAGCTACATGGTACGGTTTCAGTATCCTGATGAGGTCT
CCTCGGATGCCTCAAGTACGGGTGAACTTTCTGTGGGGGGTAAATTATACGAATTACATTATGGCTCTCTTCGTCGAAAT
TACTCCTTTAGTGGGAAGGCAGATTTTGAGCTCAAAGATGTGATGAATAATCTTGGGCTCACTTTTTTCAAATTTGAAGG
AGACAATATCCCTAGAATTTTCATTGTGAATTCAGATCGGAGTGAGACTCGAGCTAGGATGTGGCGGTTTAGGGATTATA
TGGTGATAGAAGGTGTGCATAAGAAATTGCATCTACGTTACAAGGATTCCGTGTTAGAAGTGGTGAATAATGATTTGGGG
TAG

Upstream 100 bases:

>100_bases
ATTGTGTCTGTCAGATACAGTTATATGGATCTTGATCTTTCAGAAGAGGATAGGCGCCTCAATCCTCTTGGTTTTGTTGT
TGTTTCTTATCAGGTAGATG

Downstream 100 bases:

>100_bases
TTGGTTATGCGCGGAAATAAGGAAAACAACGATTTGGAAGAGTTTAGTATAGGTGATGAGTCTGTAGAGGTTAGTGACAG
AGGTTCCGGGATACAAGGTG

Product: type IV secretion system protein VirB9

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIIRELFFVVFFALFCIRAYALEHDPRVRTLVYSESTIFQVDTSYGYQSFIKFSDKERIKTIALGNSIGWSVNPVGEKIF
LRPLEKGLSTNMVVVTDKRTYVFDLLSASEEDEKKRKVNETSYMVRFQYPDEVSSDASSTGELSVGGKLYELHYGSLRRN
YSFSGKADFELKDVMNNLGLTFFKFEGDNIPRIFIVNSDRSETRARMWRFRDYMVIEGVHKKLHLRYKDSVLEVVNNDLG

Sequences:

>Translated_240_residues
MIIRELFFVVFFALFCIRAYALEHDPRVRTLVYSESTIFQVDTSYGYQSFIKFSDKERIKTIALGNSIGWSVNPVGEKIF
LRPLEKGLSTNMVVVTDKRTYVFDLLSASEEDEKKRKVNETSYMVRFQYPDEVSSDASSTGELSVGGKLYELHYGSLRRN
YSFSGKADFELKDVMNNLGLTFFKFEGDNIPRIFIVNSDRSETRARMWRFRDYMVIEGVHKKLHLRYKDSVLEVVNNDLG
>Mature_240_residues
MIIRELFFVVFFALFCIRAYALEHDPRVRTLVYSESTIFQVDTSYGYQSFIKFSDKERIKTIALGNSIGWSVNPVGEKIF
LRPLEKGLSTNMVVVTDKRTYVFDLLSASEEDEKKRKVNETSYMVRFQYPDEVSSDASSTGELSVGGKLYELHYGSLRRN
YSFSGKADFELKDVMNNLGLTFFKFEGDNIPRIFIVNSDRSETRARMWRFRDYMVIEGVHKKLHLRYKDSVLEVVNNDLG

Specific function: Unknown

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 27898; Mature: 27898

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIRELFFVVFFALFCIRAYALEHDPRVRTLVYSESTIFQVDTSYGYQSFIKFSDKERIK
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHHHHHCCCCHHHEE
TIALGNSIGWSVNPVGEKIFLRPLEKGLSTNMVVVTDKRTYVFDLLSASEEDEKKRKVNE
EEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHCCC
TSYMVRFQYPDEVSSDASSTGELSVGGKLYELHYGSLRRNYSFSGKADFELKDVMNNLGL
CEEEEEEECCCCCCCCCCCCCCEEECCEEEEEECCHHHCCCCCCCCCCCCHHHHHHHCCE
TFFKFEGDNIPRIFIVNSDRSETRARMWRFRDYMVIEGVHKKLHLRYKDSVLEVVNNDLG
EEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHEEECCCHHEEEHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIIRELFFVVFFALFCIRAYALEHDPRVRTLVYSESTIFQVDTSYGYQSFIKFSDKERIK
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCHHHHHCCCCHHHEE
TIALGNSIGWSVNPVGEKIFLRPLEKGLSTNMVVVTDKRTYVFDLLSASEEDEKKRKVNE
EEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHCCC
TSYMVRFQYPDEVSSDASSTGELSVGGKLYELHYGSLRRNYSFSGKADFELKDVMNNLGL
CEEEEEEECCCCCCCCCCCCCCEEECCEEEEEECCHHHCCCCCCCCCCCCHHHHHHHCCE
TFFKFEGDNIPRIFIVNSDRSETRARMWRFRDYMVIEGVHKKLHLRYKDSVLEVVNNDLG
EEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHEEECCCHHEEEHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12910271; 3584073 [H]