Click here to switch to the map view.

The map label for this gene is ybeY [C]

Identifier: 88608284

GI number: 88608284

Start: 211566

End: 211997

Strand: Reverse

Name: ybeY [C]

Synonym: NSE_0249

Alternate gene names: 88608284

Gene position: 211997-211566 (Counterclockwise)

Preceding gene: 88608406

Following gene: 88608573

Centisome position: 24.68

GC content: 36.57

Gene sequence:

>432_bases
ATGCTAGAAATTCGAATTACAGACCCACGTTGGACAAAAAAGTTAAAGAATCTTGATGCCTTACTACAAAAAGCCCTTGA
ATGTTGTCTAGAAGGAAAAAAAGCTGAGTTCTCTGTCGTATTAACAGATGATGAGTTTATAAGAACCTTGAACAAAAGCT
ATAGAGGAAGAGATACTCCAACGAACGTTTTGTCATTCAATTACACGAACGAACAAATCGGAATTGGAATCATAGGAGAG
GTGATACTTTCCTTTGACAGGCTAGTTATCGAAGCCCTAGAAAATGAAATTAAATTTGAAGACCACTTGTTGCATATGTT
CATTCACGGGGTGTTACATGTACTAGGTTATGATCATTCCTCTGATAGGGAGACATTGGCCATGGAAAAAAAAGAAGAAG
AAATTCTGAAGAAATTAGCTCTACTAGGGTAA

Upstream 100 bases:

>100_bases
GCTTTAGCATACCTCCAATTTGTTAATATGTTGAGTTTTTTCGCATAATTAAGTAAAATTATTAATTTTTTGTATTGGCT
GCAATATCTGCCAAGTTGGT

Downstream 100 bases:

>100_bases
TTGCAAAATGAATTTTGATGTAGTACTGAATTGAGAATACCCGGGGGATTTATATATTCGCGTCGTGACTAAATTTTCGC
TTCATAAGGAAGGCTTGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MLEIRITDPRWTKKLKNLDALLQKALECCLEGKKAEFSVVLTDDEFIRTLNKSYRGRDTPTNVLSFNYTNEQIGIGIIGE
VILSFDRLVIEALENEIKFEDHLLHMFIHGVLHVLGYDHSSDRETLAMEKKEEEILKKLALLG

Sequences:

>Translated_143_residues
MLEIRITDPRWTKKLKNLDALLQKALECCLEGKKAEFSVVLTDDEFIRTLNKSYRGRDTPTNVLSFNYTNEQIGIGIIGE
VILSFDRLVIEALENEIKFEDHLLHMFIHGVLHVLGYDHSSDRETLAMEKKEEEILKKLALLG
>Mature_143_residues
MLEIRITDPRWTKKLKNLDALLQKALECCLEGKKAEFSVVLTDDEFIRTLNKSYRGRDTPTNVLSFNYTNEQIGIGIIGE
VILSFDRLVIEALENEIKFEDHLLHMFIHGVLHVLGYDHSSDRETLAMEKKEEEILKKLALLG

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=88, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_NEOSM (Q2GEF3)

Other databases:

- EMBL:   CP000237
- RefSeq:   YP_506143.1
- ProteinModelPortal:   Q2GEF3
- SMR:   Q2GEF3
- STRING:   Q2GEF3
- GeneID:   3932018
- GenomeReviews:   CP000237_GR
- KEGG:   nse:NSE_0249
- TIGR:   NSE_0249
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   ETLAMEK
- PhylomeDB:   Q2GEF3
- ProtClustDB:   CLSK2527823
- BioCyc:   NSEN222891:NSE_0249-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16486; Mature: 16486

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEIRITDPRWTKKLKNLDALLQKALECCLEGKKAEFSVVLTDDEFIRTLNKSYRGRDTP
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHCCCCCC
TNVLSFNYTNEQIGIGIIGEVILSFDRLVIEALENEIKFEDHLLHMFIHGVLHVLGYDHS
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SDRETLAMEKKEEEILKKLALLG
CCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLEIRITDPRWTKKLKNLDALLQKALECCLEGKKAEFSVVLTDDEFIRTLNKSYRGRDTP
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHCCCCCC
TNVLSFNYTNEQIGIGIIGEVILSFDRLVIEALENEIKFEDHLLHMFIHGVLHVLGYDHS
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SDRETLAMEKKEEEILKKLALLG
CCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA