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The map label for this gene is psd

Identifier: 88608573

GI number: 88608573

Start: 210824

End: 211501

Strand: Reverse

Name: psd

Synonym: NSE_0248

Alternate gene names: 88608573

Gene position: 211501-210824 (Counterclockwise)

Preceding gene: 88608284

Following gene: 88608529

Centisome position: 24.62

GC content: 46.31

Gene sequence:

>678_bases
GTGACTAAATTTTCGCTTCATAAGGAAGGCTTGCTCACTATCGGCTTCACGCTGGCTTGCACAGCGGTAGCCTTTTTTTT
CGTTCCTGCACTAGGTTTGTGTGGAATCTGTGTTGCTGCGCTGGTCACCTACTTCTTCAGGGATCCTCAGCGCGCAATAG
CTATATCCAAGGATTTTGTCCTTAGTCCAGCAGATGGGTTAATCTGCAAGATCGAAAACGCCTTACCACCACAAAGTAGT
GAGCTGGTCGAGGAAATGCAGAAAATTAGTGTTTACTTAAGCCCCTTGAATGTGCATGTCAATCGTATACCGGTTGATGG
CATAGTGAGAAAACTGCATTATGTACCGGGAAAGAATTTGCGTGCTGACTATGATAGCTCGGAGGATGAAAACGAGAGGC
AGGAAAGCACAATAGAGATGGCAGACGGTAGGAACGTGGTGGTTGTCCAACAGACAGGTTTTCTTGCGCGGCGTGTGGTT
TGCGATTTGAGAAAAGATCAACAAGTTTCTGCCGGAAAGCGGTTTGGTATTATCAAGTTTGGCAGCAGGGTCACTGTATA
TATCCCCAAAGATATGCCTCTACTTGTTTCTGAAGGACAAACTGTCGTCGCTGGCGAAACGATTCTGGCATTGCTTAGTG
AGACGGCATCTCTTGTAACTGAGCGTTTTCTCGATTAA

Upstream 100 bases:

>100_bases
GAAGAAATTCTGAAGAAATTAGCTCTACTAGGGTAATTGCAAAATGAATTTTGATGTAGTACTGAATTGAGAATACCCGG
GGGATTTATATATTCGCGTC

Downstream 100 bases:

>100_bases
CAGATTGTGAAGAGTCGTTCTGTTCCAATAACAAGGTTTTTCCCTAATTTTATTACATTTTGTGGTTTGTGTCTTGGGCT
CACTTCGATAAGGTTTTCAC

Product: phosphatidylserine decarboxylase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTKFSLHKEGLLTIGFTLACTAVAFFFVPALGLCGICVAALVTYFFRDPQRAIAISKDFVLSPADGLICKIENALPPQSS
ELVEEMQKISVYLSPLNVHVNRIPVDGIVRKLHYVPGKNLRADYDSSEDENERQESTIEMADGRNVVVVQQTGFLARRVV
CDLRKDQQVSAGKRFGIIKFGSRVTVYIPKDMPLLVSEGQTVVAGETILALLSETASLVTERFLD

Sequences:

>Translated_225_residues
MTKFSLHKEGLLTIGFTLACTAVAFFFVPALGLCGICVAALVTYFFRDPQRAIAISKDFVLSPADGLICKIENALPPQSS
ELVEEMQKISVYLSPLNVHVNRIPVDGIVRKLHYVPGKNLRADYDSSEDENERQESTIEMADGRNVVVVQQTGFLARRVV
CDLRKDQQVSAGKRFGIIKFGSRVTVYIPKDMPLLVSEGQTVVAGETILALLSETASLVTERFLD
>Mature_224_residues
TKFSLHKEGLLTIGFTLACTAVAFFFVPALGLCGICVAALVTYFFRDPQRAIAISKDFVLSPADGLICKIENALPPQSSE
LVEEMQKISVYLSPLNVHVNRIPVDGIVRKLHYVPGKNLRADYDSSEDENERQESTIEMADGRNVVVVQQTGFLARRVVC
DLRKDQQVSAGKRFGIIKFGSRVTVYIPKDMPLLVSEGQTVVAGETILALLSETASLVTERFLD

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_NEOSM (Q2GEF4)

Other databases:

- EMBL:   CP000237
- RefSeq:   YP_506142.1
- ProteinModelPortal:   Q2GEF4
- STRING:   Q2GEF4
- GeneID:   3932283
- GenomeReviews:   CP000237_GR
- KEGG:   nse:NSE_0248
- TIGR:   NSE_0248
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   CLSK2528002
- BioCyc:   NSEN222891:NSE_0248-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 24795; Mature: 24664

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKFSLHKEGLLTIGFTLACTAVAFFFVPALGLCGICVAALVTYFFRDPQRAIAISKDFV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCEE
LSPADGLICKIENALPPQSSELVEEMQKISVYLSPLNVHVNRIPVDGIVRKLHYVPGKNL
ECCCCCEEEEECCCCCCCHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHHHCCCCCCC
RADYDSSEDENERQESTIEMADGRNVVVVQQTGFLARRVVCDLRKDQQVSAGKRFGIIKF
CCCCCCCCCCHHHHHHHEEECCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEEEE
GSRVTVYIPKDMPLLVSEGQTVVAGETILALLSETASLVTERFLD
CCEEEEEECCCCCEEEECCCEEEEHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKFSLHKEGLLTIGFTLACTAVAFFFVPALGLCGICVAALVTYFFRDPQRAIAISKDFV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCEE
LSPADGLICKIENALPPQSSELVEEMQKISVYLSPLNVHVNRIPVDGIVRKLHYVPGKNL
ECCCCCEEEEECCCCCCCHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHHHCCCCCCC
RADYDSSEDENERQESTIEMADGRNVVVVQQTGFLARRVVCDLRKDQQVSAGKRFGIIKF
CCCCCCCCCCHHHHHHHEEECCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEEEE
GSRVTVYIPKDMPLLVSEGQTVVAGETILALLSETASLVTERFLD
CCEEEEEECCCCCEEEECCCEEEEHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA