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The map label for this gene is radC

Identifier: 88608186

GI number: 88608186

Start: 194766

End: 195476

Strand: Reverse

Name: radC

Synonym: NSE_0229

Alternate gene names: 88608186

Gene position: 195476-194766 (Counterclockwise)

Preceding gene: 88608440

Following gene: 88608564

Centisome position: 22.76

GC content: 43.74

Gene sequence:

>711_bases
ATGAAAAAATTAAGACAAGAAGATGTACAAATTGAACCTGGGTCGTTACATAAGGGGCATAGACTCAGGCTTCGGCAGCG
GATAATACAAGACACAGCTGGGACTATTTCAGAGTTGGAATTGCTAGAGTACTTGCTCTTTGGCACCCATCCCAGGATTG
ATATTAAGCCTTTGGCTAAGTCTTTACTGAAAGAGTTCGGAGATTTTAAGAAACTTTTTGCTGCTGATCCTGACGACTTG
AGGAGCGTAAACGGTGTAAGTGATGCCGTTGTTGCACTCATCAGAACCGTGCGCGAGAGTATGAAAGCAATTCTAAGAAA
GGATCTGACATCCAGAACTACCTTAAAATCGTGGAAATCAGTTGTAGACTACTTGCGTTTAAGTATTGGAAATAAACCTG
TCGAGACAATACGTGTCCTTTTTCTTAACAAGAAATACACCCTGATCAGAGAGTATGTTCAGGAACTTGGGGCCGCTGAT
CACACGCCGCTCTGTATGAGAGAAATCATTAAGAAATGCTTGACCTGTGGCGCAAGCGCGATGGTTATTGCGCATAATCA
CCCTAGCGGCAACCCCCTACCCTCACAAGAGGACTTACTCATAACCGGAAAGTTGAAGAAGATCTGTCAGAAAGTGGATG
TACAGCTTGTAGACCACTTCATCGTAACACCACATGATCATTTCAGCTTTGTGGTTAACGGGCTTCTGTGA

Upstream 100 bases:

>100_bases
ATAAGGTGCGACCGCTGCGAAACACCATATTTCGGCAGAATTTGATTTTTCTGTTTATCTCGTTCTAGCGGTTCGCGACA
GGTAAGGTGCCGGGCTGACT

Downstream 100 bases:

>100_bases
TGACAGATAGACAGCTTTGATGTACCATTCTATCGACAATCAAGTATGGTGCTCATGGACTCAGTCGTTATTGGTGGGGG
AGCATGGGGAACTGCAATCG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKKLRQEDVQIEPGSLHKGHRLRLRQRIIQDTAGTISELELLEYLLFGTHPRIDIKPLAKSLLKEFGDFKKLFAADPDDL
RSVNGVSDAVVALIRTVRESMKAILRKDLTSRTTLKSWKSVVDYLRLSIGNKPVETIRVLFLNKKYTLIREYVQELGAAD
HTPLCMREIIKKCLTCGASAMVIAHNHPSGNPLPSQEDLLITGKLKKICQKVDVQLVDHFIVTPHDHFSFVVNGLL

Sequences:

>Translated_236_residues
MKKLRQEDVQIEPGSLHKGHRLRLRQRIIQDTAGTISELELLEYLLFGTHPRIDIKPLAKSLLKEFGDFKKLFAADPDDL
RSVNGVSDAVVALIRTVRESMKAILRKDLTSRTTLKSWKSVVDYLRLSIGNKPVETIRVLFLNKKYTLIREYVQELGAAD
HTPLCMREIIKKCLTCGASAMVIAHNHPSGNPLPSQEDLLITGKLKKICQKVDVQLVDHFIVTPHDHFSFVVNGLL
>Mature_236_residues
MKKLRQEDVQIEPGSLHKGHRLRLRQRIIQDTAGTISELELLEYLLFGTHPRIDIKPLAKSLLKEFGDFKKLFAADPDDL
RSVNGVSDAVVALIRTVRESMKAILRKDLTSRTTLKSWKSVVDYLRLSIGNKPVETIRVLFLNKKYTLIREYVQELGAAD
HTPLCMREIIKKCLTCGASAMVIAHNHPSGNPLPSQEDLLITGKLKKICQKVDVQLVDHFIVTPHDHFSFVVNGLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=27.6995305164319, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI2367100, Length=142, Percent_Identity=33.8028169014084, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788997, Length=142, Percent_Identity=33.8028169014084, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788312, Length=140, Percent_Identity=35, Blast_Score=84, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 26711; Mature: 26711

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLRQEDVQIEPGSLHKGHRLRLRQRIIQDTAGTISELELLEYLLFGTHPRIDIKPLAK
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHH
SLLKEFGDFKKLFAADPDDLRSVNGVSDAVVALIRTVRESMKAILRKDLTSRTTLKSWKS
HHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVDYLRLSIGNKPVETIRVLFLNKKYTLIREYVQELGAADHTPLCMREIIKKCLTCGASA
HHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCE
MVIAHNHPSGNPLPSQEDLLITGKLKKICQKVDVQLVDHFIVTPHDHFSFVVNGLL
EEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKKLRQEDVQIEPGSLHKGHRLRLRQRIIQDTAGTISELELLEYLLFGTHPRIDIKPLAK
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHH
SLLKEFGDFKKLFAADPDDLRSVNGVSDAVVALIRTVRESMKAILRKDLTSRTTLKSWKS
HHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVDYLRLSIGNKPVETIRVLFLNKKYTLIREYVQELGAADHTPLCMREIIKKCLTCGASA
HHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCE
MVIAHNHPSGNPLPSQEDLLITGKLKKICQKVDVQLVDHFIVTPHDHFSFVVNGLL
EEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA