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The map label for this gene is 88608440

Identifier: 88608440

GI number: 88608440

Start: 195578

End: 196012

Strand: Reverse

Name: 88608440

Synonym: NSE_0230

Alternate gene names: NA

Gene position: 196012-195578 (Counterclockwise)

Preceding gene: 88608558

Following gene: 88608186

Centisome position: 22.82

GC content: 40.92

Gene sequence:

>435_bases
ATGCCTAAAATCTCTGAGAATTTTAAGAAACGTGCGGAAACTGACGTGATGATTGGAAAGCAGATTCGTAGGCTTAGGAC
CCTTAAAGGTTATAGCCAAGCTGCCATAGCCAAGGAAATTGGTGTGACCTTCCAGCAGCTTCAAAAGTACGAATGCGGTG
CAAACCGCCTTTGCGTAAGCAGGCTGCTTGACATATGTAAGTTTTGTAAAGTTTCGCCCTCCTATTTTTTTGCTTCGCTA
AATAAGGAGCAAGAAGGGGACACATTGCACGATTCAGAAAACAGTATAGAGTTTGAACATGAGAATGAATATAACAAGGA
GCTTCTGGTTTTAGTACGTGCATTCAAGTCCATTACGCAAGATTCAGTAAGAAGTAAAGTTCTCTCATTGGTAAAGACTA
TGTCTCAAGCTTATGGAGAGGAAAAAGATGAGTGA

Upstream 100 bases:

>100_bases
TATTGGTATTGTTAATAATGCTAATATGATTGTTGTTGTTTATCTACCGGTTAGGAGTTAGCATAATACTTTACGTTTAT
TCACGGTACAGTGTTTTTAT

Downstream 100 bases:

>100_bases
TATAAGGTGCGACCGCTGCGAAACACCATATTTCGGCAGAATTTGATTTTTCTGTTTATCTCGTTCTAGCGGTTCGCGAC
AGGTAAGGTGCCGGGCTGAC

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MPKISENFKKRAETDVMIGKQIRRLRTLKGYSQAAIAKEIGVTFQQLQKYECGANRLCVSRLLDICKFCKVSPSYFFASL
NKEQEGDTLHDSENSIEFEHENEYNKELLVLVRAFKSITQDSVRSKVLSLVKTMSQAYGEEKDE

Sequences:

>Translated_144_residues
MPKISENFKKRAETDVMIGKQIRRLRTLKGYSQAAIAKEIGVTFQQLQKYECGANRLCVSRLLDICKFCKVSPSYFFASL
NKEQEGDTLHDSENSIEFEHENEYNKELLVLVRAFKSITQDSVRSKVLSLVKTMSQAYGEEKDE
>Mature_143_residues
PKISENFKKRAETDVMIGKQIRRLRTLKGYSQAAIAKEIGVTFQQLQKYECGANRLCVSRLLDICKFCKVSPSYFFASLN
KEQEGDTLHDSENSIEFEHENEYNKELLVLVRAFKSITQDSVRSKVLSLVKTMSQAYGEEKDE

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 16566; Mature: 16435

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKISENFKKRAETDVMIGKQIRRLRTLKGYSQAAIAKEIGVTFQQLQKYECGANRLCVS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RLLDICKFCKVSPSYFFASLNKEQEGDTLHDSENSIEFEHENEYNKELLVLVRAFKSITQ
HHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
DSVRSKVLSLVKTMSQAYGEEKDE
HHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PKISENFKKRAETDVMIGKQIRRLRTLKGYSQAAIAKEIGVTFQQLQKYECGANRLCVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RLLDICKFCKVSPSYFFASLNKEQEGDTLHDSENSIEFEHENEYNKELLVLVRAFKSITQ
HHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
DSVRSKVLSLVKTMSQAYGEEKDE
HHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]