| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201215
Identifier: 87201215
GI number: 87201215
Start: 3419630
End: 3420844
Strand: Reverse
Name: 87201215
Synonym: Saro_3203
Alternate gene names: NA
Gene position: 3420844-3419630 (Counterclockwise)
Preceding gene: 87201218
Following gene: 87201214
Centisome position: 96.05
GC content: 63.79
Gene sequence:
>1215_bases ATGACGCCAGCCGCACCGGCGATGGGCACGACCGAAATATTCCTGATCGCGCTGACAATCATCGTTTCGGTACCATACCT GGCATGGCGGCTGCTGCGCACCGATTACTGGGCGCCGCTCGTCGTCGTCCAGATCATCGGCGGCATCCTGCTCGGACCGG GCGTGCTCGGCGCGGCATTCCCGGAATACTACGCCTTCGTCTTCAATCAGCAGGTCATCGGATCGCTCAACGGCATCGCG TGGTGGGCGGTGATGATGTTCGTATTCGTGGCGGGCCTCGAACTGGACATAACCGATGCCTGGGCCAACCGCCGGGAGAC GACGATTACCGCCGCCGGAGCTTTGCTGACGCCGCTCGTCACCGGTGCGATCGCCGCCGCATTCCTCCTGCGCGGGCCCG GCTGGATCGGTCCCAATGGAACATACCCGCAGGCCGTCCTCGGCATAGGAATGGCCTGCGCCGTGACAGCGCTCCCCATC CTCGTCCTGCTGATGGAAAAGCTCGGCATATTCCGGGAGCCACTCGGCCAGCGCCTGCTGCGCTACGCCAGCCTTGACGA TATCGCCATCTGGGGCGTCCTCGCGCTGATCCTCGTCGACTGGCACCGCGTGGAACGGCAGGCGATCTTCCTCGCAGGGT TCGCCGTGGCCGCCTGGGTCGTCCGCGCCCTGTTCCGTCGTCTCGAAGAGAGCGACCGCTGGTACGTTTCGCTGATCTGG CTGGCCGTGGTCGGCTTCGCGGCCGACTGGTCGGGCCTGCACTTCATGGTCGGCGCATTTCTGGCCGGTGCCGTGCTCGA TGCGCACTGGTTCACGCGTGATCGGCTCGATGGTTTCCGCCAGTTCCTCCTGCTTGCGGTCATGCCCGTCTTCTTCCTTT CGACGGGCCTGCGCACAAAGTGGGATGTCGGCGGACTCGCCGTATTCGGTGCGGCATTCCTGTTTCTTGTCGCTTCGGTG GCGGGGAAGCTCGTCGGCGTGCGGATCGCGGGCCGCATCCTTGGCTGGGCCAAGGGTGATGCCTCGATCATCGGCTGGAT GCTCCAGACCAAGGCGCTGATCATGATCATCTTCGTCAACGTCCTGCTCGACAAGGGCATCGTGACGAACGAGACGTTTA CGGCGCTCCTGCTCATGGCGGTGATGAGCACGATGCTTACCGTACCCATGGTTACACCGAAGCTGAGGGCGCTGGCGAAA CCAACCGTCCATTAA
Upstream 100 bases:
>100_bases GTCATGGGCCGTCTCCTGGTGAAGGCGATATGGCCTTAGAGGTCGATTGGACAAGCCGTCGCGAACGCGCAAGGACGATG GCGCATCGGGAGGACAAGCA
Downstream 100 bases:
>100_bases CACCCGTTCCGCTAGGTTCGGCGGAATGGAGACGGTTGATCTGGTCATGGCGGGCGTTGCCGGGCTGATGCTCGGCCTGT GCCTGTGCCTATATCGCTTC
Product: sodium/hydrogen exchanger
Products: NA
Alternate protein names: Na+/H+ Antiporter; Cation/H+ Antiporter; CationProton Antiporter; Na(+)/H(+) Antiporter; Sodium/Hydrogen Antiporter; Sodium/Hydrogen Exchanger Family Protein; Monovalent CationProton Antiporter-2 Family Protein; Cation Transporter/Universal Stress Family Protein; K+/H+-Antiporter; Na/H Antiporter; Na+/H+-Exchanging Protein; CationProton Antiporter Transmembrane Protein; Integral Membrane Ion Exchanger; Germination Protein GerN; Cation/Hydrogen Exchanger; Cation/Proton Antiporter; Na+/ H+ Antiporter; Transporter Monovalent CationProton Antiporter Family; Na/H(+) Antiporter; Na/H Exchanger Membrane Protein; Sodium/Hydrogen Transporter; Kef-Type K+ Transport System Membrane Component; Transmembrane Na+/H+ Exchanger Family Transporter Protein; Kef-Type K+ Transport Systems; Glutathione-Regulated Potassium-Efflux System Protein KefB; Na+H+ Antiporter; Filamentation Induced By CAMP Protein Fic; Kef-Type K+ Transporter Membrane Components-Like Protein; Membrane Antiporter
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MTPAAPAMGTTEIFLIALTIIVSVPYLAWRLLRTDYWAPLVVVQIIGGILLGPGVLGAAFPEYYAFVFNQQVIGSLNGIA WWAVMMFVFVAGLELDITDAWANRRETTITAAGALLTPLVTGAIAAAFLLRGPGWIGPNGTYPQAVLGIGMACAVTALPI LVLLMEKLGIFREPLGQRLLRYASLDDIAIWGVLALILVDWHRVERQAIFLAGFAVAAWVVRALFRRLEESDRWYVSLIW LAVVGFAADWSGLHFMVGAFLAGAVLDAHWFTRDRLDGFRQFLLLAVMPVFFLSTGLRTKWDVGGLAVFGAAFLFLVASV AGKLVGVRIAGRILGWAKGDASIIGWMLQTKALIMIIFVNVLLDKGIVTNETFTALLLMAVMSTMLTVPMVTPKLRALAK PTVH
Sequences:
>Translated_404_residues MTPAAPAMGTTEIFLIALTIIVSVPYLAWRLLRTDYWAPLVVVQIIGGILLGPGVLGAAFPEYYAFVFNQQVIGSLNGIA WWAVMMFVFVAGLELDITDAWANRRETTITAAGALLTPLVTGAIAAAFLLRGPGWIGPNGTYPQAVLGIGMACAVTALPI LVLLMEKLGIFREPLGQRLLRYASLDDIAIWGVLALILVDWHRVERQAIFLAGFAVAAWVVRALFRRLEESDRWYVSLIW LAVVGFAADWSGLHFMVGAFLAGAVLDAHWFTRDRLDGFRQFLLLAVMPVFFLSTGLRTKWDVGGLAVFGAAFLFLVASV AGKLVGVRIAGRILGWAKGDASIIGWMLQTKALIMIIFVNVLLDKGIVTNETFTALLLMAVMSTMLTVPMVTPKLRALAK PTVH >Mature_403_residues TPAAPAMGTTEIFLIALTIIVSVPYLAWRLLRTDYWAPLVVVQIIGGILLGPGVLGAAFPEYYAFVFNQQVIGSLNGIAW WAVMMFVFVAGLELDITDAWANRRETTITAAGALLTPLVTGAIAAAFLLRGPGWIGPNGTYPQAVLGIGMACAVTALPIL VLLMEKLGIFREPLGQRLLRYASLDDIAIWGVLALILVDWHRVERQAIFLAGFAVAAWVVRALFRRLEESDRWYVSLIWL AVVGFAADWSGLHFMVGAFLAGAVLDAHWFTRDRLDGFRQFLLLAVMPVFFLSTGLRTKWDVGGLAVFGAAFLFLVASVA GKLVGVRIAGRILGWAKGDASIIGWMLQTKALIMIIFVNVLLDKGIVTNETFTALLLMAVMSTMLTVPMVTPKLRALAKP TVH
Specific function: Unknown
COG id: COG0475
COG function: function code P; Kef-type K+ transport systems, membrane components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6322367, Length=406, Percent_Identity=23.3990147783251, Blast_Score=91, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43972; Mature: 43841
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPAAPAMGTTEIFLIALTIIVSVPYLAWRLLRTDYWAPLVVVQIIGGILLGPGVLGAAF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHH PEYYAFVFNQQVIGSLNGIAWWAVMMFVFVAGLELDITDAWANRRETTITAAGALLTPLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCHHHHHHHHHHHHH TGAIAAAFLLRGPGWIGPNGTYPQAVLGIGMACAVTALPILVLLMEKLGIFREPLGQRLL HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RYASLDDIAIWGVLALILVDWHRVERQAIFLAGFAVAAWVVRALFRRLEESDRWYVSLIW HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH LAVVGFAADWSGLHFMVGAFLAGAVLDAHWFTRDRLDGFRQFLLLAVMPVFFLSTGLRTK HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC WDVGGLAVFGAAFLFLVASVAGKLVGVRIAGRILGWAKGDASIIGWMLQTKALIMIIFVN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH VLLDKGIVTNETFTALLLMAVMSTMLTVPMVTPKLRALAKPTVH HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC >Mature Secondary Structure TPAAPAMGTTEIFLIALTIIVSVPYLAWRLLRTDYWAPLVVVQIIGGILLGPGVLGAAF CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHH PEYYAFVFNQQVIGSLNGIAWWAVMMFVFVAGLELDITDAWANRRETTITAAGALLTPLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCHHHHHHHHHHHHH TGAIAAAFLLRGPGWIGPNGTYPQAVLGIGMACAVTALPILVLLMEKLGIFREPLGQRLL HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RYASLDDIAIWGVLALILVDWHRVERQAIFLAGFAVAAWVVRALFRRLEESDRWYVSLIW HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH LAVVGFAADWSGLHFMVGAFLAGAVLDAHWFTRDRLDGFRQFLLLAVMPVFFLSTGLRTK HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC WDVGGLAVFGAAFLFLVASVAGKLVGVRIAGRILGWAKGDASIIGWMLQTKALIMIIFVN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH VLLDKGIVTNETFTALLLMAVMSTMLTVPMVTPKLRALAKPTVH HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA