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The map label for this gene is yebA [C]

Identifier: 87201169

GI number: 87201169

Start: 3369948

End: 3370664

Strand: Direct

Name: yebA [C]

Synonym: Saro_3157

Alternate gene names: 87201169

Gene position: 3369948-3370664 (Clockwise)

Preceding gene: 87201168

Following gene: 87201171

Centisome position: 94.62

GC content: 66.11

Gene sequence:

>717_bases
ATGTTGTTCAACATCAAAACCTTCAAGACTGCTCTCGGTGCCTTTGCCGCCGTTGCTCTCTTTTCCTCTGCCGCGCCGGC
TCTTGCCAACAGCGCCGCTTCCGCCGACATCGCCGCCCCGCTTCGCGCCGCCGAAGCTGCCAAGGCAGGCGTCTCGGCCG
ACCGTGGCGACGAGGAATTCCGTCGTCTCTTCGCCAACTGGCAGTCGCTCGACAACGGCATCCTGCCTTCGGCCAAGCCG
ACCACGATCCGCCGCGCTTCGGTGTCGATCCCGTCGCTTGCCCCGGTTGCGATGACCCGCCTTTCCAGCAGCTACGGCAT
GCGCGAACACCCCGTGCTCGGCGGTCGCCGCGCACACAAGGGCATCGACCTTGCCGCCCCCACCGGCACCCCGATCCGCG
CCAGCGCCGACGGCATCGTCGAGAAGGCCGAATGGTTCGGTGGCTACGGCCTGTTCGTGCAACTCGACCATGGCGGCGCG
ATGGAAACCCGCTACGGCCACATGTCGCGCGTTGCCGTTGCCGAAGGCCAGCAGGTCCGCAAGGGCGACGTGATCGGCTA
TGTCGGTTCGACCGGCCGCTCGACCGGCCCGCACCTGCATTATGAAGTCCGCGTGTCGGGCGAAGCCGTCAACCCGGTGC
CCTACATGCAGGGGAGCACCAAGCTCTACGCAAGCAACAACTCGGCCGAAGGACGCGGCGGTCCGGAAGAAGAATAA

Upstream 100 bases:

>100_bases
CTCGCCTGATAACGGGTTCGCACTGGGGGCTCAGGCGGATTGGTCAAATTGCCGGAAACGGCGCCGACCGAACCGCAAGA
AGAAGGTCGTACGGGTCGTA

Downstream 100 bases:

>100_bases
GCCGCCCCGGTCTAATAGACGCATCTTGGAGAGGATGCGGAAAAGGGCGCCGGTTGCCGGCGCCCTTTTCTTTTGCGTGA
ATGGGGCGGGAAGCGCCGAC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MLFNIKTFKTALGAFAAVALFSSAAPALANSAASADIAAPLRAAEAAKAGVSADRGDEEFRRLFANWQSLDNGILPSAKP
TTIRRASVSIPSLAPVAMTRLSSSYGMREHPVLGGRRAHKGIDLAAPTGTPIRASADGIVEKAEWFGGYGLFVQLDHGGA
METRYGHMSRVAVAEGQQVRKGDVIGYVGSTGRSTGPHLHYEVRVSGEAVNPVPYMQGSTKLYASNNSAEGRGGPEEE

Sequences:

>Translated_238_residues
MLFNIKTFKTALGAFAAVALFSSAAPALANSAASADIAAPLRAAEAAKAGVSADRGDEEFRRLFANWQSLDNGILPSAKP
TTIRRASVSIPSLAPVAMTRLSSSYGMREHPVLGGRRAHKGIDLAAPTGTPIRASADGIVEKAEWFGGYGLFVQLDHGGA
METRYGHMSRVAVAEGQQVRKGDVIGYVGSTGRSTGPHLHYEVRVSGEAVNPVPYMQGSTKLYASNNSAEGRGGPEEE
>Mature_238_residues
MLFNIKTFKTALGAFAAVALFSSAAPALANSAASADIAAPLRAAEAAKAGVSADRGDEEFRRLFANWQSLDNGILPSAKP
TTIRRASVSIPSLAPVAMTRLSSSYGMREHPVLGGRRAHKGIDLAAPTGTPIRASADGIVEKAEWFGGYGLFVQLDHGGA
METRYGHMSRVAVAEGQQVRKGDVIGYVGSTGRSTGPHLHYEVRVSGEAVNPVPYMQGSTKLYASNNSAEGRGGPEEE

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=115, Percent_Identity=46.0869565217391, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87082297, Length=104, Percent_Identity=42.3076923076923, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=38.3838383838384, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082174, Length=104, Percent_Identity=36.5384615384615, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 24957; Mature: 24957

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFNIKTFKTALGAFAAVALFSSAAPALANSAASADIAAPLRAAEAAKAGVSADRGDEEF
CEECCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
RRLFANWQSLDNGILPSAKPTTIRRASVSIPSLAPVAMTRLSSSYGMREHPVLGGRRAHK
HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
GIDLAAPTGTPIRASADGIVEKAEWFGGYGLFVQLDHGGAMETRYGHMSRVAVAEGQQVR
CCEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHEEEHHCCCCCC
KGDVIGYVGSTGRSTGPHLHYEVRVSGEAVNPVPYMQGSTKLYASNNSAEGRGGPEEE
CCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLFNIKTFKTALGAFAAVALFSSAAPALANSAASADIAAPLRAAEAAKAGVSADRGDEEF
CEECCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
RRLFANWQSLDNGILPSAKPTTIRRASVSIPSLAPVAMTRLSSSYGMREHPVLGGRRAHK
HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
GIDLAAPTGTPIRASADGIVEKAEWFGGYGLFVQLDHGGAMETRYGHMSRVAVAEGQQVR
CCEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHEEEHHCCCCCC
KGDVIGYVGSTGRSTGPHLHYEVRVSGEAVNPVPYMQGSTKLYASNNSAEGRGGPEEE
CCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]