| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201145
Identifier: 87201145
GI number: 87201145
Start: 3344239
End: 3344697
Strand: Direct
Name: 87201145
Synonym: Saro_3133
Alternate gene names: NA
Gene position: 3344239-3344697 (Clockwise)
Preceding gene: 87201144
Following gene: 87201146
Centisome position: 93.9
GC content: 63.83
Gene sequence:
>459_bases ATGAGCGACCCCATCACATATTCCACCATCACGCCGCGGCTCGGCCTGCCCATGCTCTTTGCGGGGCAATCGCAGAAGGA AACCACGGTCAACGAAGCGCTCTGGCAGATCGACATGCTGGTTGGCGGGGCCATCGAGGGCGAGCTTTCGAGCCCGCCGG CCTCGCCACTGGCAGGCCAGGCCTGGCTGGTCGGGGCCTCGCCCACCGGGGCATTCGCCCATCATGAAGGCGACCTGGCC GCTTGGACCGACGGCGGGTGGCGTTTCATTTCTCCAGCGCCCGGCCTTCGCGTCCATGACCGTACGACAGAGGCGATGCG CTTCTACGACGGAGTGTGGAGAATTGGCACGAGTCCGGCTCTTCCGACGGGCGGGAGCGTAATCGACACCGAAGCGCGTG CCACTATTGCCGCACTAGTGCAGCTACTTGCAGAAATCGGCATTATTTCCGCAACCTGA
Upstream 100 bases:
>100_bases CGGATGGAACCTTCCTGGTGCGCCAGGTTGGTCGCGCCGCGATGTCGCTGCGCCTTGCCATTCCCTTCCCCGCCTGACCG GCCAGACCGAGAGGAACACC
Downstream 100 bases:
>100_bases CTGGAACCAATTGGCACGGTTGGCATTCCAACGGCACATGAGGGCGCAATCAACTGACGAATTGCATCTAAAAACGGTCT CAATCCGTTGTTTTTATGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MSDPITYSTITPRLGLPMLFAGQSQKETTVNEALWQIDMLVGGAIEGELSSPPASPLAGQAWLVGASPTGAFAHHEGDLA AWTDGGWRFISPAPGLRVHDRTTEAMRFYDGVWRIGTSPALPTGGSVIDTEARATIAALVQLLAEIGIISAT
Sequences:
>Translated_152_residues MSDPITYSTITPRLGLPMLFAGQSQKETTVNEALWQIDMLVGGAIEGELSSPPASPLAGQAWLVGASPTGAFAHHEGDLA AWTDGGWRFISPAPGLRVHDRTTEAMRFYDGVWRIGTSPALPTGGSVIDTEARATIAALVQLLAEIGIISAT >Mature_151_residues SDPITYSTITPRLGLPMLFAGQSQKETTVNEALWQIDMLVGGAIEGELSSPPASPLAGQAWLVGASPTGAFAHHEGDLAA WTDGGWRFISPAPGLRVHDRTTEAMRFYDGVWRIGTSPALPTGGSVIDTEARATIAALVQLLAEIGIISAT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15971; Mature: 15840
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPITYSTITPRLGLPMLFAGQSQKETTVNEALWQIDMLVGGAIEGELSSPPASPLAGQ CCCCCCCEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC AWLVGASPTGAFAHHEGDLAAWTDGGWRFISPAPGLRVHDRTTEAMRFYDGVWRIGTSPA EEEEECCCCCCCEECCCCEEEEECCCEEEECCCCCCEEECCHHHHHHHHHHHHCCCCCCC LPTGGSVIDTEARATIAALVQLLAEIGIISAT CCCCCCEECCHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SDPITYSTITPRLGLPMLFAGQSQKETTVNEALWQIDMLVGGAIEGELSSPPASPLAGQ CCCCCCEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC AWLVGASPTGAFAHHEGDLAAWTDGGWRFISPAPGLRVHDRTTEAMRFYDGVWRIGTSPA EEEEECCCCCCCEECCCCEEEEECCCEEEECCCCCCEEECCHHHHHHHHHHHHCCCCCCC LPTGGSVIDTEARATIAALVQLLAEIGIISAT CCCCCCEECCHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA