| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201144
Identifier: 87201144
GI number: 87201144
Start: 3342011
End: 3344215
Strand: Direct
Name: 87201144
Synonym: Saro_3132
Alternate gene names: NA
Gene position: 3342011-3344215 (Clockwise)
Preceding gene: 87201143
Following gene: 87201145
Centisome position: 93.83
GC content: 67.44
Gene sequence:
>2205_bases ATGCTGATCGTCATGGCAACGCTCATTCTCACGGCCGTCGGCACGGCCCTCGGTGGCCCGCTTGGCGGCGCGATCGGCGC CCTGCTCGGACAGCAGGTGGATTCCGCCATTGTCGGCGGGCGCAAGGTCGAAGGCCCCCGGCTCAAGGAGCTTTCGGTCC AGACATCCAGCTACGGATCGTCGCTGCCACTGCATTTCGGGCGCACACGAGCCGCAGGCAGCGTGATCTGGGCAACCGAA CTGGTCGAACACAAGGAAAAGTCGGGCGGCGGCAAGGGGCGACCTTCGGTCACCAGCTACAGCTATACCGCATCGTTTGC CGTTGCCCTGGCCGGTCGCCCCATCTCCGGAATTGGCCGGGTGTGGGCGGACGGAAACCTTCTGCGCGGGGAAAGCGGCG ACCTGAAGGTCGGCGGGACCATGCGCATCCACACCGGTCACGGGGATCAGGCAGCCGACCCGCTGCTGTCCCAGGCCGAG GGAGCGGCCATGAACCCGGCCTATCGCAACACCGCCTATGTGGTGTTCGAGGATCTGGAGCTTGCCGACTACGGCAACAG GCTACCGTCGCTGACCTTCGAGATCATCGCCGACGACGCGCCGACTTCGGTCGCGAGCATCATCGCATCGCTCCTGCCGG ACGCCGATGTGCAGGAACTTGTCGGTGAGACCCTCCCCGGCTTCAGCATCGACCAGGGGACGGCCTCGGACGTGCTGGCA GTGCTTTCCGATCTGTCACCTCTGAGCTGTGCGGTGCGCGAGGAAACGGTGACGTTTCGCAACGCGGACGAAATAGGGTC CGCGTCGCTGCCACTGCTCCCGCTGCCGACCGCTGGCGGGGAGCGTGCCGATGACGCGAAGATCGAGGGCTGGTCGCGCA AGCGGCAGGCGCTGCCGGCCGCCAGGCAATGCGTCGTGCGATACTATGACACCGCGCGGGACTATCAGCCCGGCCTGCAA CGCAGCATCGGCCGCAACAGTCCCGGCGACGTCCGTTCGATCGAGCTTCCCGCCGCGCTCTCAGCGACGCAGGCCCGCTC CATCGCGGAGCGTTCCGCGCGCCGCCTGACCGTGCCGGGTGACACGATGCGCTATCGCATCACGGAGTTGGACCGCACGT TCGAGCCGGGTGCGTTCGTGAAGGCGCAGACCGGCGATGAGGTCTGGCGGATCGACGAATGGGAATGGCAGGCCGATGGC CTGATGCTCGGGCTGTCGGTTGTGCCGGCCCGGTCCCAGTCGGCGAGCGCGGCGGACCCAGGAAGGTCGAACCAGTCGGC CGATGTCCTCGCAGTCCCCACGCGGATCACCGCCTTCGAGATTCCCTGGAACGAATCCGATTCGAGCACTGCTGCAATCG TGCGCGTTGCCGCGACTGCAGCGACATCTGCCTGGTCCGGCGCGGCGCTTTACTGCCGGCAACTCGACGAGACGCTTCAG TCGCTCGGGTCAACGGGGCGCCAGCGGGCGATTGCGGGCGTTTCCGCAACCACCCTCGCCGCGGCCTCGCCGCTCCTGCT CGACACGACCGGGACAGTCGACGTGGAGCTTGCCTCGGCCGACTTCGTACTGGGCAATGCGACCTGGGCACAATTGATGC AGGGTGCGAACACCGCCCTCCTGGGCGGCGAATTCGTGCAGTTCGCAAGGGCCGAACGCGTGGCGTGGGCAACGTGGCGG CTTGGCGGGCTCCTGCGGGGGCGAGGCGGCACAGAGCACGCGGTTGCGACCCACATCGTGGGCGAGGCCTTCGTGCTGAT CGACGAGAACCTCGTTGCGCCCGACCTGTCTGGGATCGACACCGCCACGGCAGAGATAATTGCCATAGGCCGCGGCGACA ACGAGGCGGCATCCAGCGCCATCCTGAACACCGGCCTTACGCTTCGGCCGCTGATGCCGGTGCACGGCAAGGCCACTCGG ACGTCCGACGGCGGAATCGAGCTGCAATGGGTGCGCCGTGCGCGCGGAGCCTGGACCTGGCGCGACGAAGTCGACGTTCC GCTCGATGAAGGCAGCGAGCAGTGGGAAGTCGCCTTCTCCCAGGGCACGTCGGCGCTGCGCGTCTGGCTGACGGACGAGA GCACGCTGCTGATCGATGCGGCGATGGCGGACGAACTGGCGCTTGCCCCGGATGGAACCTTCCTGGTGCGCCAGGTTGGT CGCGCCGCGATGTCGCTGCGCCTTGCCATTCCCTTCCCCGCCTGA
Upstream 100 bases:
>100_bases GGGGCTTTGTCCATGCCCACGCCTCTCTTGGGCGGGTGACCTTCCTGCCGGGTGCGATTCCCTGGCCCGTCGCCCGGCAC TGGCGGCTTCTTTCAAAGGA
Downstream 100 bases:
>100_bases CCGGCCAGACCGAGAGGAACACCATGAGCGACCCCATCACATATTCCACCATCACGCCGCGGCTCGGCCTGCCCATGCTC TTTGCGGGGCAATCGCAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: Gene Transfer Agent Like Protein; Gene Transfer Agent Orfg; Gene Transfer Agent Protein; Phage Hocificity Protein; Gene Transfer Agent-Like Protein; Gene Transfer Agent Product
Number of amino acids: Translated: 734; Mature: 734
Protein sequence:
>734_residues MLIVMATLILTAVGTALGGPLGGAIGALLGQQVDSAIVGGRKVEGPRLKELSVQTSSYGSSLPLHFGRTRAAGSVIWATE LVEHKEKSGGGKGRPSVTSYSYTASFAVALAGRPISGIGRVWADGNLLRGESGDLKVGGTMRIHTGHGDQAADPLLSQAE GAAMNPAYRNTAYVVFEDLELADYGNRLPSLTFEIIADDAPTSVASIIASLLPDADVQELVGETLPGFSIDQGTASDVLA VLSDLSPLSCAVREETVTFRNADEIGSASLPLLPLPTAGGERADDAKIEGWSRKRQALPAARQCVVRYYDTARDYQPGLQ RSIGRNSPGDVRSIELPAALSATQARSIAERSARRLTVPGDTMRYRITELDRTFEPGAFVKAQTGDEVWRIDEWEWQADG LMLGLSVVPARSQSASAADPGRSNQSADVLAVPTRITAFEIPWNESDSSTAAIVRVAATAATSAWSGAALYCRQLDETLQ SLGSTGRQRAIAGVSATTLAAASPLLLDTTGTVDVELASADFVLGNATWAQLMQGANTALLGGEFVQFARAERVAWATWR LGGLLRGRGGTEHAVATHIVGEAFVLIDENLVAPDLSGIDTATAEIIAIGRGDNEAASSAILNTGLTLRPLMPVHGKATR TSDGGIELQWVRRARGAWTWRDEVDVPLDEGSEQWEVAFSQGTSALRVWLTDESTLLIDAAMADELALAPDGTFLVRQVG RAAMSLRLAIPFPA
Sequences:
>Translated_734_residues MLIVMATLILTAVGTALGGPLGGAIGALLGQQVDSAIVGGRKVEGPRLKELSVQTSSYGSSLPLHFGRTRAAGSVIWATE LVEHKEKSGGGKGRPSVTSYSYTASFAVALAGRPISGIGRVWADGNLLRGESGDLKVGGTMRIHTGHGDQAADPLLSQAE GAAMNPAYRNTAYVVFEDLELADYGNRLPSLTFEIIADDAPTSVASIIASLLPDADVQELVGETLPGFSIDQGTASDVLA VLSDLSPLSCAVREETVTFRNADEIGSASLPLLPLPTAGGERADDAKIEGWSRKRQALPAARQCVVRYYDTARDYQPGLQ RSIGRNSPGDVRSIELPAALSATQARSIAERSARRLTVPGDTMRYRITELDRTFEPGAFVKAQTGDEVWRIDEWEWQADG LMLGLSVVPARSQSASAADPGRSNQSADVLAVPTRITAFEIPWNESDSSTAAIVRVAATAATSAWSGAALYCRQLDETLQ SLGSTGRQRAIAGVSATTLAAASPLLLDTTGTVDVELASADFVLGNATWAQLMQGANTALLGGEFVQFARAERVAWATWR LGGLLRGRGGTEHAVATHIVGEAFVLIDENLVAPDLSGIDTATAEIIAIGRGDNEAASSAILNTGLTLRPLMPVHGKATR TSDGGIELQWVRRARGAWTWRDEVDVPLDEGSEQWEVAFSQGTSALRVWLTDESTLLIDAAMADELALAPDGTFLVRQVG RAAMSLRLAIPFPA >Mature_734_residues MLIVMATLILTAVGTALGGPLGGAIGALLGQQVDSAIVGGRKVEGPRLKELSVQTSSYGSSLPLHFGRTRAAGSVIWATE LVEHKEKSGGGKGRPSVTSYSYTASFAVALAGRPISGIGRVWADGNLLRGESGDLKVGGTMRIHTGHGDQAADPLLSQAE GAAMNPAYRNTAYVVFEDLELADYGNRLPSLTFEIIADDAPTSVASIIASLLPDADVQELVGETLPGFSIDQGTASDVLA VLSDLSPLSCAVREETVTFRNADEIGSASLPLLPLPTAGGERADDAKIEGWSRKRQALPAARQCVVRYYDTARDYQPGLQ RSIGRNSPGDVRSIELPAALSATQARSIAERSARRLTVPGDTMRYRITELDRTFEPGAFVKAQTGDEVWRIDEWEWQADG LMLGLSVVPARSQSASAADPGRSNQSADVLAVPTRITAFEIPWNESDSSTAAIVRVAATAATSAWSGAALYCRQLDETLQ SLGSTGRQRAIAGVSATTLAAASPLLLDTTGTVDVELASADFVLGNATWAQLMQGANTALLGGEFVQFARAERVAWATWR LGGLLRGRGGTEHAVATHIVGEAFVLIDENLVAPDLSGIDTATAEIIAIGRGDNEAASSAILNTGLTLRPLMPVHGKATR TSDGGIELQWVRRARGAWTWRDEVDVPLDEGSEQWEVAFSQGTSALRVWLTDESTLLIDAAMADELALAPDGTFLVRQVG RAAMSLRLAIPFPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77434; Mature: 77434
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIVMATLILTAVGTALGGPLGGAIGALLGQQVDSAIVGGRKVEGPRLKELSVQTSSYGS CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEEEECCCCCC SLPLHFGRTRAAGSVIWATELVEHKEKSGGGKGRPSVTSYSYTASFAVALAGRPISGIGR CCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEHHEEEEEECCCCCCCCHH VWADGNLLRGESGDLKVGGTMRIHTGHGDQAADPLLSQAEGAAMNPAYRNTAYVVFEDLE EECCCCEEECCCCCEEECCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCC LADYGNRLPSLTFEIIADDAPTSVASIIASLLPDADVQELVGETLPGFSIDQGTASDVLA HHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHH VLSDLSPLSCAVREETVTFRNADEIGSASLPLLPLPTAGGERADDAKIEGWSRKRQALPA HHHCCCCHHHHHHHHEEEECCCHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCHH ARQCVVRYYDTARDYQPGLQRSIGRNSPGDVRSIELPAALSATQARSIAERSARRLTVPG HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECCC DTMRYRITELDRTFEPGAFVKAQTGDEVWRIDEWEWQADGLMLGLSVVPARSQSASAADP CCCEEEEEHHCCCCCCCCEEEECCCCCEEEECCCEECCCCEEEEEEEECCCCCCCCCCCC GRSNQSADVLAVPTRITAFEIPWNESDSSTAAIVRVAATAATSAWSGAALYCRQLDETLQ CCCCCCCCEEEECCEEEEEECCCCCCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHH SLGSTGRQRAIAGVSATTLAAASPLLLDTTGTVDVELASADFVLGNATWAQLMQGANTAL HHCCCCHHHHHCCCCHHHHHHCCCEEEECCCCEEEEEECCCEEECCCHHHHHHCCCCCEE LGGEFVQFARAERVAWATWRLGGLLRGRGGTEHAVATHIVGEAFVLIDENLVAPDLSGID ECHHHHHHHHHHHHEEEHHHHCCEEECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCCC TATAEIIAIGRGDNEAASSAILNTGLTLRPLMPVHGKATRTSDGGIELQWVRRARGAWTW CCCEEEEEEECCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEEEEHHHCCCCEE RDEVDVPLDEGSEQWEVAFSQGTSALRVWLTDESTLLIDAAMADELALAPDGTFLVRQVG CCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCEEEEEEECCCCEEECCCCHHHHHHHH RAAMSLRLAIPFPA HHHEEEEEEECCCC >Mature Secondary Structure MLIVMATLILTAVGTALGGPLGGAIGALLGQQVDSAIVGGRKVEGPRLKELSVQTSSYGS CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEEEECCCCCC SLPLHFGRTRAAGSVIWATELVEHKEKSGGGKGRPSVTSYSYTASFAVALAGRPISGIGR CCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEHHEEEEEECCCCCCCCHH VWADGNLLRGESGDLKVGGTMRIHTGHGDQAADPLLSQAEGAAMNPAYRNTAYVVFEDLE EECCCCEEECCCCCEEECCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCC LADYGNRLPSLTFEIIADDAPTSVASIIASLLPDADVQELVGETLPGFSIDQGTASDVLA HHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHH VLSDLSPLSCAVREETVTFRNADEIGSASLPLLPLPTAGGERADDAKIEGWSRKRQALPA HHHCCCCHHHHHHHHEEEECCCHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCHH ARQCVVRYYDTARDYQPGLQRSIGRNSPGDVRSIELPAALSATQARSIAERSARRLTVPG HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECCC DTMRYRITELDRTFEPGAFVKAQTGDEVWRIDEWEWQADGLMLGLSVVPARSQSASAADP CCCEEEEEHHCCCCCCCCEEEECCCCCEEEECCCEECCCCEEEEEEEECCCCCCCCCCCC GRSNQSADVLAVPTRITAFEIPWNESDSSTAAIVRVAATAATSAWSGAALYCRQLDETLQ CCCCCCCCEEEECCEEEEEECCCCCCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHH SLGSTGRQRAIAGVSATTLAAASPLLLDTTGTVDVELASADFVLGNATWAQLMQGANTAL HHCCCCHHHHHCCCCHHHHHHCCCEEEECCCCEEEEEECCCEEECCCHHHHHHCCCCCEE LGGEFVQFARAERVAWATWRLGGLLRGRGGTEHAVATHIVGEAFVLIDENLVAPDLSGID ECHHHHHHHHHHHHEEEHHHHCCEEECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCCC TATAEIIAIGRGDNEAASSAILNTGLTLRPLMPVHGKATRTSDGGIELQWVRRARGAWTW CCCEEEEEEECCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEEEEHHHCCCCEE RDEVDVPLDEGSEQWEVAFSQGTSALRVWLTDESTLLIDAAMADELALAPDGTFLVRQVG CCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCEEEEEEECCCCEEECCCCHHHHHHHH RAAMSLRLAIPFPA HHHEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA