Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is 87201144

Identifier: 87201144

GI number: 87201144

Start: 3342011

End: 3344215

Strand: Direct

Name: 87201144

Synonym: Saro_3132

Alternate gene names: NA

Gene position: 3342011-3344215 (Clockwise)

Preceding gene: 87201143

Following gene: 87201145

Centisome position: 93.83

GC content: 67.44

Gene sequence:

>2205_bases
ATGCTGATCGTCATGGCAACGCTCATTCTCACGGCCGTCGGCACGGCCCTCGGTGGCCCGCTTGGCGGCGCGATCGGCGC
CCTGCTCGGACAGCAGGTGGATTCCGCCATTGTCGGCGGGCGCAAGGTCGAAGGCCCCCGGCTCAAGGAGCTTTCGGTCC
AGACATCCAGCTACGGATCGTCGCTGCCACTGCATTTCGGGCGCACACGAGCCGCAGGCAGCGTGATCTGGGCAACCGAA
CTGGTCGAACACAAGGAAAAGTCGGGCGGCGGCAAGGGGCGACCTTCGGTCACCAGCTACAGCTATACCGCATCGTTTGC
CGTTGCCCTGGCCGGTCGCCCCATCTCCGGAATTGGCCGGGTGTGGGCGGACGGAAACCTTCTGCGCGGGGAAAGCGGCG
ACCTGAAGGTCGGCGGGACCATGCGCATCCACACCGGTCACGGGGATCAGGCAGCCGACCCGCTGCTGTCCCAGGCCGAG
GGAGCGGCCATGAACCCGGCCTATCGCAACACCGCCTATGTGGTGTTCGAGGATCTGGAGCTTGCCGACTACGGCAACAG
GCTACCGTCGCTGACCTTCGAGATCATCGCCGACGACGCGCCGACTTCGGTCGCGAGCATCATCGCATCGCTCCTGCCGG
ACGCCGATGTGCAGGAACTTGTCGGTGAGACCCTCCCCGGCTTCAGCATCGACCAGGGGACGGCCTCGGACGTGCTGGCA
GTGCTTTCCGATCTGTCACCTCTGAGCTGTGCGGTGCGCGAGGAAACGGTGACGTTTCGCAACGCGGACGAAATAGGGTC
CGCGTCGCTGCCACTGCTCCCGCTGCCGACCGCTGGCGGGGAGCGTGCCGATGACGCGAAGATCGAGGGCTGGTCGCGCA
AGCGGCAGGCGCTGCCGGCCGCCAGGCAATGCGTCGTGCGATACTATGACACCGCGCGGGACTATCAGCCCGGCCTGCAA
CGCAGCATCGGCCGCAACAGTCCCGGCGACGTCCGTTCGATCGAGCTTCCCGCCGCGCTCTCAGCGACGCAGGCCCGCTC
CATCGCGGAGCGTTCCGCGCGCCGCCTGACCGTGCCGGGTGACACGATGCGCTATCGCATCACGGAGTTGGACCGCACGT
TCGAGCCGGGTGCGTTCGTGAAGGCGCAGACCGGCGATGAGGTCTGGCGGATCGACGAATGGGAATGGCAGGCCGATGGC
CTGATGCTCGGGCTGTCGGTTGTGCCGGCCCGGTCCCAGTCGGCGAGCGCGGCGGACCCAGGAAGGTCGAACCAGTCGGC
CGATGTCCTCGCAGTCCCCACGCGGATCACCGCCTTCGAGATTCCCTGGAACGAATCCGATTCGAGCACTGCTGCAATCG
TGCGCGTTGCCGCGACTGCAGCGACATCTGCCTGGTCCGGCGCGGCGCTTTACTGCCGGCAACTCGACGAGACGCTTCAG
TCGCTCGGGTCAACGGGGCGCCAGCGGGCGATTGCGGGCGTTTCCGCAACCACCCTCGCCGCGGCCTCGCCGCTCCTGCT
CGACACGACCGGGACAGTCGACGTGGAGCTTGCCTCGGCCGACTTCGTACTGGGCAATGCGACCTGGGCACAATTGATGC
AGGGTGCGAACACCGCCCTCCTGGGCGGCGAATTCGTGCAGTTCGCAAGGGCCGAACGCGTGGCGTGGGCAACGTGGCGG
CTTGGCGGGCTCCTGCGGGGGCGAGGCGGCACAGAGCACGCGGTTGCGACCCACATCGTGGGCGAGGCCTTCGTGCTGAT
CGACGAGAACCTCGTTGCGCCCGACCTGTCTGGGATCGACACCGCCACGGCAGAGATAATTGCCATAGGCCGCGGCGACA
ACGAGGCGGCATCCAGCGCCATCCTGAACACCGGCCTTACGCTTCGGCCGCTGATGCCGGTGCACGGCAAGGCCACTCGG
ACGTCCGACGGCGGAATCGAGCTGCAATGGGTGCGCCGTGCGCGCGGAGCCTGGACCTGGCGCGACGAAGTCGACGTTCC
GCTCGATGAAGGCAGCGAGCAGTGGGAAGTCGCCTTCTCCCAGGGCACGTCGGCGCTGCGCGTCTGGCTGACGGACGAGA
GCACGCTGCTGATCGATGCGGCGATGGCGGACGAACTGGCGCTTGCCCCGGATGGAACCTTCCTGGTGCGCCAGGTTGGT
CGCGCCGCGATGTCGCTGCGCCTTGCCATTCCCTTCCCCGCCTGA

Upstream 100 bases:

>100_bases
GGGGCTTTGTCCATGCCCACGCCTCTCTTGGGCGGGTGACCTTCCTGCCGGGTGCGATTCCCTGGCCCGTCGCCCGGCAC
TGGCGGCTTCTTTCAAAGGA

Downstream 100 bases:

>100_bases
CCGGCCAGACCGAGAGGAACACCATGAGCGACCCCATCACATATTCCACCATCACGCCGCGGCTCGGCCTGCCCATGCTC
TTTGCGGGGCAATCGCAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: Gene Transfer Agent Like Protein; Gene Transfer Agent Orfg; Gene Transfer Agent Protein; Phage Hocificity Protein; Gene Transfer Agent-Like Protein; Gene Transfer Agent Product

Number of amino acids: Translated: 734; Mature: 734

Protein sequence:

>734_residues
MLIVMATLILTAVGTALGGPLGGAIGALLGQQVDSAIVGGRKVEGPRLKELSVQTSSYGSSLPLHFGRTRAAGSVIWATE
LVEHKEKSGGGKGRPSVTSYSYTASFAVALAGRPISGIGRVWADGNLLRGESGDLKVGGTMRIHTGHGDQAADPLLSQAE
GAAMNPAYRNTAYVVFEDLELADYGNRLPSLTFEIIADDAPTSVASIIASLLPDADVQELVGETLPGFSIDQGTASDVLA
VLSDLSPLSCAVREETVTFRNADEIGSASLPLLPLPTAGGERADDAKIEGWSRKRQALPAARQCVVRYYDTARDYQPGLQ
RSIGRNSPGDVRSIELPAALSATQARSIAERSARRLTVPGDTMRYRITELDRTFEPGAFVKAQTGDEVWRIDEWEWQADG
LMLGLSVVPARSQSASAADPGRSNQSADVLAVPTRITAFEIPWNESDSSTAAIVRVAATAATSAWSGAALYCRQLDETLQ
SLGSTGRQRAIAGVSATTLAAASPLLLDTTGTVDVELASADFVLGNATWAQLMQGANTALLGGEFVQFARAERVAWATWR
LGGLLRGRGGTEHAVATHIVGEAFVLIDENLVAPDLSGIDTATAEIIAIGRGDNEAASSAILNTGLTLRPLMPVHGKATR
TSDGGIELQWVRRARGAWTWRDEVDVPLDEGSEQWEVAFSQGTSALRVWLTDESTLLIDAAMADELALAPDGTFLVRQVG
RAAMSLRLAIPFPA

Sequences:

>Translated_734_residues
MLIVMATLILTAVGTALGGPLGGAIGALLGQQVDSAIVGGRKVEGPRLKELSVQTSSYGSSLPLHFGRTRAAGSVIWATE
LVEHKEKSGGGKGRPSVTSYSYTASFAVALAGRPISGIGRVWADGNLLRGESGDLKVGGTMRIHTGHGDQAADPLLSQAE
GAAMNPAYRNTAYVVFEDLELADYGNRLPSLTFEIIADDAPTSVASIIASLLPDADVQELVGETLPGFSIDQGTASDVLA
VLSDLSPLSCAVREETVTFRNADEIGSASLPLLPLPTAGGERADDAKIEGWSRKRQALPAARQCVVRYYDTARDYQPGLQ
RSIGRNSPGDVRSIELPAALSATQARSIAERSARRLTVPGDTMRYRITELDRTFEPGAFVKAQTGDEVWRIDEWEWQADG
LMLGLSVVPARSQSASAADPGRSNQSADVLAVPTRITAFEIPWNESDSSTAAIVRVAATAATSAWSGAALYCRQLDETLQ
SLGSTGRQRAIAGVSATTLAAASPLLLDTTGTVDVELASADFVLGNATWAQLMQGANTALLGGEFVQFARAERVAWATWR
LGGLLRGRGGTEHAVATHIVGEAFVLIDENLVAPDLSGIDTATAEIIAIGRGDNEAASSAILNTGLTLRPLMPVHGKATR
TSDGGIELQWVRRARGAWTWRDEVDVPLDEGSEQWEVAFSQGTSALRVWLTDESTLLIDAAMADELALAPDGTFLVRQVG
RAAMSLRLAIPFPA
>Mature_734_residues
MLIVMATLILTAVGTALGGPLGGAIGALLGQQVDSAIVGGRKVEGPRLKELSVQTSSYGSSLPLHFGRTRAAGSVIWATE
LVEHKEKSGGGKGRPSVTSYSYTASFAVALAGRPISGIGRVWADGNLLRGESGDLKVGGTMRIHTGHGDQAADPLLSQAE
GAAMNPAYRNTAYVVFEDLELADYGNRLPSLTFEIIADDAPTSVASIIASLLPDADVQELVGETLPGFSIDQGTASDVLA
VLSDLSPLSCAVREETVTFRNADEIGSASLPLLPLPTAGGERADDAKIEGWSRKRQALPAARQCVVRYYDTARDYQPGLQ
RSIGRNSPGDVRSIELPAALSATQARSIAERSARRLTVPGDTMRYRITELDRTFEPGAFVKAQTGDEVWRIDEWEWQADG
LMLGLSVVPARSQSASAADPGRSNQSADVLAVPTRITAFEIPWNESDSSTAAIVRVAATAATSAWSGAALYCRQLDETLQ
SLGSTGRQRAIAGVSATTLAAASPLLLDTTGTVDVELASADFVLGNATWAQLMQGANTALLGGEFVQFARAERVAWATWR
LGGLLRGRGGTEHAVATHIVGEAFVLIDENLVAPDLSGIDTATAEIIAIGRGDNEAASSAILNTGLTLRPLMPVHGKATR
TSDGGIELQWVRRARGAWTWRDEVDVPLDEGSEQWEVAFSQGTSALRVWLTDESTLLIDAAMADELALAPDGTFLVRQVG
RAAMSLRLAIPFPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 77434; Mature: 77434

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIVMATLILTAVGTALGGPLGGAIGALLGQQVDSAIVGGRKVEGPRLKELSVQTSSYGS
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEEEECCCCCC
SLPLHFGRTRAAGSVIWATELVEHKEKSGGGKGRPSVTSYSYTASFAVALAGRPISGIGR
CCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEHHEEEEEECCCCCCCCHH
VWADGNLLRGESGDLKVGGTMRIHTGHGDQAADPLLSQAEGAAMNPAYRNTAYVVFEDLE
EECCCCEEECCCCCEEECCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCC
LADYGNRLPSLTFEIIADDAPTSVASIIASLLPDADVQELVGETLPGFSIDQGTASDVLA
HHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHH
VLSDLSPLSCAVREETVTFRNADEIGSASLPLLPLPTAGGERADDAKIEGWSRKRQALPA
HHHCCCCHHHHHHHHEEEECCCHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCHH
ARQCVVRYYDTARDYQPGLQRSIGRNSPGDVRSIELPAALSATQARSIAERSARRLTVPG
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECCC
DTMRYRITELDRTFEPGAFVKAQTGDEVWRIDEWEWQADGLMLGLSVVPARSQSASAADP
CCCEEEEEHHCCCCCCCCEEEECCCCCEEEECCCEECCCCEEEEEEEECCCCCCCCCCCC
GRSNQSADVLAVPTRITAFEIPWNESDSSTAAIVRVAATAATSAWSGAALYCRQLDETLQ
CCCCCCCCEEEECCEEEEEECCCCCCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHH
SLGSTGRQRAIAGVSATTLAAASPLLLDTTGTVDVELASADFVLGNATWAQLMQGANTAL
HHCCCCHHHHHCCCCHHHHHHCCCEEEECCCCEEEEEECCCEEECCCHHHHHHCCCCCEE
LGGEFVQFARAERVAWATWRLGGLLRGRGGTEHAVATHIVGEAFVLIDENLVAPDLSGID
ECHHHHHHHHHHHHEEEHHHHCCEEECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCCC
TATAEIIAIGRGDNEAASSAILNTGLTLRPLMPVHGKATRTSDGGIELQWVRRARGAWTW
CCCEEEEEEECCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEEEEHHHCCCCEE
RDEVDVPLDEGSEQWEVAFSQGTSALRVWLTDESTLLIDAAMADELALAPDGTFLVRQVG
CCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCEEEEEEECCCCEEECCCCHHHHHHHH
RAAMSLRLAIPFPA
HHHEEEEEEECCCC
>Mature Secondary Structure
MLIVMATLILTAVGTALGGPLGGAIGALLGQQVDSAIVGGRKVEGPRLKELSVQTSSYGS
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEEEECCCCCC
SLPLHFGRTRAAGSVIWATELVEHKEKSGGGKGRPSVTSYSYTASFAVALAGRPISGIGR
CCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEHHEEEEEECCCCCCCCHH
VWADGNLLRGESGDLKVGGTMRIHTGHGDQAADPLLSQAEGAAMNPAYRNTAYVVFEDLE
EECCCCEEECCCCCEEECCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCC
LADYGNRLPSLTFEIIADDAPTSVASIIASLLPDADVQELVGETLPGFSIDQGTASDVLA
HHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHH
VLSDLSPLSCAVREETVTFRNADEIGSASLPLLPLPTAGGERADDAKIEGWSRKRQALPA
HHHCCCCHHHHHHHHEEEECCCHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCHH
ARQCVVRYYDTARDYQPGLQRSIGRNSPGDVRSIELPAALSATQARSIAERSARRLTVPG
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECCC
DTMRYRITELDRTFEPGAFVKAQTGDEVWRIDEWEWQADGLMLGLSVVPARSQSASAADP
CCCEEEEEHHCCCCCCCCEEEECCCCCEEEECCCEECCCCEEEEEEEECCCCCCCCCCCC
GRSNQSADVLAVPTRITAFEIPWNESDSSTAAIVRVAATAATSAWSGAALYCRQLDETLQ
CCCCCCCCEEEECCEEEEEECCCCCCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHH
SLGSTGRQRAIAGVSATTLAAASPLLLDTTGTVDVELASADFVLGNATWAQLMQGANTAL
HHCCCCHHHHHCCCCHHHHHHCCCEEEECCCCEEEEEECCCEEECCCHHHHHHCCCCCEE
LGGEFVQFARAERVAWATWRLGGLLRGRGGTEHAVATHIVGEAFVLIDENLVAPDLSGID
ECHHHHHHHHHHHHEEEHHHHCCEEECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCCC
TATAEIIAIGRGDNEAASSAILNTGLTLRPLMPVHGKATRTSDGGIELQWVRRARGAWTW
CCCEEEEEEECCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEEEEHHHCCCCEE
RDEVDVPLDEGSEQWEVAFSQGTSALRVWLTDESTLLIDAAMADELALAPDGTFLVRQVG
CCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCEEEEEEECCCCEEECCCCHHHHHHHH
RAAMSLRLAIPFPA
HHHEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA