| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201082
Identifier: 87201082
GI number: 87201082
Start: 3289801
End: 3290493
Strand: Direct
Name: 87201082
Synonym: Saro_3070
Alternate gene names: NA
Gene position: 3289801-3290493 (Clockwise)
Preceding gene: 87201081
Following gene: 87201087
Centisome position: 92.37
GC content: 64.21
Gene sequence:
>693_bases ATGGCAGGCAGGGCAGGGTTCTGGGGAAACCGGTGGGTGCGAATGCCGCTCGGCTTTCTTGCGACCAGCGCCGCTTCGGT CCTGGCCTTCCACGCCGGACAGGACATCGCCGCCGTCATTTTCGGCAAGGGCACGGCCGAAGCCGCATCGATCGCGGTGC CGGCGAAGGCGTCCGGGCCCGTGCCAACTCCAGCCCTTGCCCGGGCCGACGATGGTCCGTTCGTCGTCAAGTCGATCCTG CCGATCCACGAGCCGATCCGCTTCGGCAAGTTTCATTGGGACGAAAGCCGCGCGCCTGCCGAAGGCCCGCTCGTCGTCAC CGTCGACCTCACAGCGCGTGTGATCTCGGTCTTCCGTGCAGGCCACGAGATCGGCGCTGCCGCCATTCTCAAAGGCTATG GCGACAAGCCTACGCCCACGGGCATCTTCCCGATCACCGAGAAGGATGCCGACCACGTCTCGAACATCTACGACGCGCCG ATGCCGTACATGATGCGCCTGACCAACGATGGCGTCTCAATCCACGGCAGCAAGGTCGAAAAGGGCTATGCCACCAACGG CTGCATCGGCGTGCCCGACGCCTTTGCCGCAAAGCTGTTCAAGCTGGCGAAGCTTGGCGACAAGGTCATTATCACCGACG GCAAGAAGATGACCATCGGCGACCCGATCCTTCCCGGCAACCACGCCGGTTGA
Upstream 100 bases:
>100_bases CCACCCACACCCCCGGCGTCCCGGGGCGGGACGGCCTGTCCGGCGGACTCGCAAGTCTGCCCGTTAACGCCTATTCCTAA TGATGAAAGGAACGGGTCGC
Downstream 100 bases:
>100_bases GCCGCCGGTTGCTCGCGCCGCCGATCAGCCCGATCCGTCAGGCAAGCCCCTTGTTCGGACTGGTGCGAGAGGCATCGCCG ACCGAACTGCCACCATCCAC
Product: ErfK/YbiS/YcfS/YnhG
Products: NA
Alternate protein names: ErfK/YbiS/YcfS/YnhG Family; ErfK/YbiS/YcfS/YnhG
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MAGRAGFWGNRWVRMPLGFLATSAASVLAFHAGQDIAAVIFGKGTAEAASIAVPAKASGPVPTPALARADDGPFVVKSIL PIHEPIRFGKFHWDESRAPAEGPLVVTVDLTARVISVFRAGHEIGAAAILKGYGDKPTPTGIFPITEKDADHVSNIYDAP MPYMMRLTNDGVSIHGSKVEKGYATNGCIGVPDAFAAKLFKLAKLGDKVIITDGKKMTIGDPILPGNHAG
Sequences:
>Translated_230_residues MAGRAGFWGNRWVRMPLGFLATSAASVLAFHAGQDIAAVIFGKGTAEAASIAVPAKASGPVPTPALARADDGPFVVKSIL PIHEPIRFGKFHWDESRAPAEGPLVVTVDLTARVISVFRAGHEIGAAAILKGYGDKPTPTGIFPITEKDADHVSNIYDAP MPYMMRLTNDGVSIHGSKVEKGYATNGCIGVPDAFAAKLFKLAKLGDKVIITDGKKMTIGDPILPGNHAG >Mature_229_residues AGRAGFWGNRWVRMPLGFLATSAASVLAFHAGQDIAAVIFGKGTAEAASIAVPAKASGPVPTPALARADDGPFVVKSILP IHEPIRFGKFHWDESRAPAEGPLVVTVDLTARVISVFRAGHEIGAAAILKGYGDKPTPTGIFPITEKDADHVSNIYDAPM PYMMRLTNDGVSIHGSKVEKGYATNGCIGVPDAFAAKLFKLAKLGDKVIITDGKKMTIGDPILPGNHAG
Specific function: Unknown
COG id: COG1376
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24095; Mature: 23964
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGRAGFWGNRWVRMPLGFLATSAASVLAFHAGQDIAAVIFGKGTAEAASIAVPAKASGP CCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEECCCCCCC VPTPALARADDGPFVVKSILPIHEPIRFGKFHWDESRAPAEGPLVVTVDLTARVISVFRA CCCCCCCCCCCCCCHHHHHHCHHCCHHCCCEECCCCCCCCCCCEEEEEEHHHHHHHHHHC GHEIGAAAILKGYGDKPTPTGIFPITEKDADHVSNIYDAPMPYMMRLTNDGVSIHGSKVE CHHHCHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCEEEEEECCCEEEECCCCC KGYATNGCIGVPDAFAAKLFKLAKLGDKVIITDGKKMTIGDPILPGNHAG CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCC >Mature Secondary Structure AGRAGFWGNRWVRMPLGFLATSAASVLAFHAGQDIAAVIFGKGTAEAASIAVPAKASGP CCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEECCCCCCC VPTPALARADDGPFVVKSILPIHEPIRFGKFHWDESRAPAEGPLVVTVDLTARVISVFRA CCCCCCCCCCCCCCHHHHHHCHHCCHHCCCEECCCCCCCCCCCEEEEEEHHHHHHHHHHC GHEIGAAAILKGYGDKPTPTGIFPITEKDADHVSNIYDAPMPYMMRLTNDGVSIHGSKVE CHHHCHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCEEEEEECCCEEEECCCCC KGYATNGCIGVPDAFAAKLFKLAKLGDKVIITDGKKMTIGDPILPGNHAG CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA