Click here to switch to the map view.

The map label for this gene is rfaB [C]

Identifier: 87201081

GI number: 87201081

Start: 3288488

End: 3289687

Strand: Direct

Name: rfaB [C]

Synonym: Saro_3069

Alternate gene names: 87201081

Gene position: 3288488-3289687 (Clockwise)

Preceding gene: 87201079

Following gene: 87201082

Centisome position: 92.33

GC content: 67.58

Gene sequence:

>1200_bases
ATGAACAACACACCGACCCCGCCCAAGGTCCTGCTGCTGTTGACCTCGCTCCACGGCGGCGGCGCCGAACGTGTCGCCGT
GCATCTGCTGAACCGCCTTCAAGGGCGCTTCGACATGCGCATGGGCCTGCTCCGCGCCTCGGGCCCCTACCTCGACCAGG
CCGACCGGTCGCGGCTGATAGTGGCGCCGGAAGGCGAGACGCACTTCAACTTCGACGGTCCCAATTCCGCCAATTACCGC
CCCGGAAAGCTGGTCGGCAGCGCAGTGCGGGCACCGCTCGCATTCCGCAGGATGATCCGCGAAACGCAGCCTGACGTCGT
GCTGAGCTTCCTCAAGGGCACCAACCTGCTGGTCTGGCTGGCGCTGATGAACATGGGCCGCGCCCGACCGCGCTGGATCG
CGCGCGAAGGCAACAACGTGCTGGCCGTCATCCGCGAGGAAGCGCCCAACGGCGCCGTGGCGCGGGCATCGCGTGACCTT
ACGGCCAAGGCCTATCGGCGGGCCGATGCCGTTCTCGCAAATTCCACCGACATGGCCGCGGGGCTGATCACCGATCTCGA
TCTCGATCCCGCGAAGATGCGGATGATCAACAATCCCATCGACATCGACGGCATACGCGAGGCAGCGGGCGAGAGCCTTC
CGGGCGCGCCCAACCGGCCCTTCATCCTGACCGCGGGCCGGCTCGAATACCAGAAGGCGCACGAGGTGCTGCTGCGCGCC
TTCGCGCGGAGCGAAGCGTGGCGCACGCACGCGCTGGTGATCCTCGGCAAGGGGAGCCGGCTGGGCGAACTGCACCGCCT
CGCCGCACAGCTCGGCATCGGCGAGTACGTGCGCTTCATCGGCTTCGTCCCCAACCCCTATGCCTGGATGGCGCGCGCCG
ATCTGTTCGTGCTGCCTTCGCGGTGGGAAGGATTTCCGACCGTGGCGGCCGAGGCGATGGCCTGCGGCACGCCCCTGCTG
CTGACCGACTGCAGATTCGGCGCGCGCGATATCGTGGAGCCCGGAGTGACCGGGGAACTGGTGCCAGTGAACGACGAGGC
AGCGCTGGCCACCGAAATCGCGGCACTGCTGGCTTCGCCGGAGCGGCGCAGTGCGCTGGCACGGGCCGGACGCGAGAAGG
TGGAACGGTTCAGGCTTGAACGAATGCTGGAAGCCTACGCTGCCCTCTTCGACGAACAGTTCGCCGCGCGTCGTCGTTAA

Upstream 100 bases:

>100_bases
GCCAGAACTCTTCAGCGCCGAAGAGTAATGTGTAACGATTATAGCTGGTTGTCATGCGCGCTCCTTGTCAGCGCATAAGC
ACGGTGCCATTTGCCCTTCG

Downstream 100 bases:

>100_bases
CTACGTTGGGTAACCACCCACACCCCCGGCGTCCCGGGGCGGGACGGCCTGTCCGGCGGACTCGCAAGTCTGCCCGTTAA
CGCCTATTCCTAATGATGAA

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MNNTPTPPKVLLLLTSLHGGGAERVAVHLLNRLQGRFDMRMGLLRASGPYLDQADRSRLIVAPEGETHFNFDGPNSANYR
PGKLVGSAVRAPLAFRRMIRETQPDVVLSFLKGTNLLVWLALMNMGRARPRWIAREGNNVLAVIREEAPNGAVARASRDL
TAKAYRRADAVLANSTDMAAGLITDLDLDPAKMRMINNPIDIDGIREAAGESLPGAPNRPFILTAGRLEYQKAHEVLLRA
FARSEAWRTHALVILGKGSRLGELHRLAAQLGIGEYVRFIGFVPNPYAWMARADLFVLPSRWEGFPTVAAEAMACGTPLL
LTDCRFGARDIVEPGVTGELVPVNDEAALATEIAALLASPERRSALARAGREKVERFRLERMLEAYAALFDEQFAARRR

Sequences:

>Translated_399_residues
MNNTPTPPKVLLLLTSLHGGGAERVAVHLLNRLQGRFDMRMGLLRASGPYLDQADRSRLIVAPEGETHFNFDGPNSANYR
PGKLVGSAVRAPLAFRRMIRETQPDVVLSFLKGTNLLVWLALMNMGRARPRWIAREGNNVLAVIREEAPNGAVARASRDL
TAKAYRRADAVLANSTDMAAGLITDLDLDPAKMRMINNPIDIDGIREAAGESLPGAPNRPFILTAGRLEYQKAHEVLLRA
FARSEAWRTHALVILGKGSRLGELHRLAAQLGIGEYVRFIGFVPNPYAWMARADLFVLPSRWEGFPTVAAEAMACGTPLL
LTDCRFGARDIVEPGVTGELVPVNDEAALATEIAALLASPERRSALARAGREKVERFRLERMLEAYAALFDEQFAARRR
>Mature_399_residues
MNNTPTPPKVLLLLTSLHGGGAERVAVHLLNRLQGRFDMRMGLLRASGPYLDQADRSRLIVAPEGETHFNFDGPNSANYR
PGKLVGSAVRAPLAFRRMIRETQPDVVLSFLKGTNLLVWLALMNMGRARPRWIAREGNNVLAVIREEAPNGAVARASRDL
TAKAYRRADAVLANSTDMAAGLITDLDLDPAKMRMINNPIDIDGIREAAGESLPGAPNRPFILTAGRLEYQKAHEVLLRA
FARSEAWRTHALVILGKGSRLGELHRLAAQLGIGEYVRFIGFVPNPYAWMARADLFVLPSRWEGFPTVAAEAMACGTPLL
LTDCRFGARDIVEPGVTGELVPVNDEAALATEIAALLASPERRSALARAGREKVERFRLERMLEAYAALFDEQFAARRR

Specific function: Adds A Galactose Goup To A Glucose Group Of Lps. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 43887; Mature: 43887

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTPTPPKVLLLLTSLHGGGAERVAVHLLNRLQGRFDMRMGLLRASGPYLDQADRSRLI
CCCCCCCHHHHHEEHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEE
VAPEGETHFNFDGPNSANYRPGKLVGSAVRAPLAFRRMIRETQPDVVLSFLKGTNLLVWL
EECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHH
ALMNMGRARPRWIAREGNNVLAVIREEAPNGAVARASRDLTAKAYRRADAVLANSTDMAA
HHHHCCCCCCCEEEECCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
GLITDLDLDPAKMRMINNPIDIDGIREAAGESLPGAPNRPFILTAGRLEYQKAHEVLLRA
HHHCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHH
FARSEAWRTHALVILGKGSRLGELHRLAAQLGIGEYVRFIGFVPNPYAWMARADLFVLPS
HHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHCCCCEEEECC
RWEGFPTVAAEAMACGTPLLLTDCRFGARDIVEPGVTGELVPVNDEAALATEIAALLASP
CCCCCHHHHHHHHHCCCCEEEECCCCCCHHHCCCCCCCCEEECCCCHHHHHHHHHHHCCC
ERRSALARAGREKVERFRLERMLEAYAALFDEQFAARRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNNTPTPPKVLLLLTSLHGGGAERVAVHLLNRLQGRFDMRMGLLRASGPYLDQADRSRLI
CCCCCCCHHHHHEEHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEE
VAPEGETHFNFDGPNSANYRPGKLVGSAVRAPLAFRRMIRETQPDVVLSFLKGTNLLVWL
EECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHH
ALMNMGRARPRWIAREGNNVLAVIREEAPNGAVARASRDLTAKAYRRADAVLANSTDMAA
HHHHCCCCCCCEEEECCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
GLITDLDLDPAKMRMINNPIDIDGIREAAGESLPGAPNRPFILTAGRLEYQKAHEVLLRA
HHHCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHH
FARSEAWRTHALVILGKGSRLGELHRLAAQLGIGEYVRFIGFVPNPYAWMARADLFVLPS
HHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHCCCCEEEECC
RWEGFPTVAAEAMACGTPLLLTDCRFGARDIVEPGVTGELVPVNDEAALATEIAALLASP
CCCCCHHHHHHHHHCCCCEEEECCCCCCHHHCCCCCCCCEEECCCCHHHHHHHHHHHCCC
ERRSALARAGREKVERFRLERMLEAYAALFDEQFAARRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]