| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200999
Identifier: 87200999
GI number: 87200999
Start: 3202684
End: 3203901
Strand: Reverse
Name: 87200999
Synonym: Saro_2987
Alternate gene names: NA
Gene position: 3203901-3202684 (Counterclockwise)
Preceding gene: 87201000
Following gene: 87200997
Centisome position: 89.96
GC content: 61.74
Gene sequence:
>1218_bases ATGTCGGTTGACCCGAAGCTTCTCGACTACTGCAACACCGACCACCAGCGCCAGATAATGCAGCGGCTTATCGCTGGTGA CAGCGGGGCGGAAATTGCTCGGGACATGGGCGTCCATCGCACCCTTCCGGACAAGGTGCGACGGCGGGTTCTGGAATACG CGGCACGGCAGGGATATGCGCCGGAAGCGGGAATTGACCATCCTGTAGCCGAGGGGTTCGAGCTTCGCGGCTACTCCCAT TTCACCAAGACGGCAGCGGGGGAGCCGATCTGGCTCAAGACCCGCGCAGCCGAACGGGCATACTGGCAGGGCATTCAAGG CGCTATCGACGGTGTGCAGCCGGTTGATGCCGCCATCCTTGCGATACCGCCCGAACCGCAATCAGACATCATCCCATGGC TGCAAATCGGTGACGCGCACATTGGCATGTTGGCGTCGGAAGAGGAAACCGGCGCGAACTTCGATATCAGCATTGCCGAG CGGGAGATATGCGCTGCTGCGGCGGCGTTGATCGATGCGGCACCGGCCTGCGAGCGGCTTGTCATCAACGACCTTGGCGA CGGCACCCATTACGAAACGTTCAAGGCGGAAACCGAAGCCAGCGGCCATAGGGTGGATCAGGACACCCGCTATTGGAAGA TGGTGCAAGCCTATATCCGGATCACCCGGTTTATCGTGGAGCGGGCGCTCACGAAGGCCCGCACGGTCGATTACATCGCC AATCAGGGCAATCATTCCCGGTCCAATGATATCTGGATCGCGGCGCTCATTGGCGCGCTCTACGAGGCCACAGGGCGCGT CAACGTCCTGCGCAACGAAAGCCCGTTTATTGCCTACCGGATGGGCCGGACCTTCGTCATGGTTCACCACGGCGACAAGG CCAAGCCCGAAGCCTGCGCCAAGCTCATGTCGGACGATTACGCTGTCGATTGGGGCGAGACAGTCTTCCGGTACATCGAC GGTGGGCACGTACACCACAGCCAGCGCAAAGAGCTTCCCGGCTGTCTGTTCGAGAGCTGGAACAACCTCGCACCGCGCGA CAAGTACGCACACGACGGCGGATGGCGCTCGAAGCAGTGCATGACGCTGGTCCTGCGGTCACGGAACTACGGCGAGACGG CCCGGATCGTGATGCCCATCGAGCGGGTGCGTGACCTGATCCGCGCCAAGCAGCCTGACCACTACGTTCCACCGGCAATG AGGGCGTTCGCAGCATGA
Upstream 100 bases:
>100_bases TGCCTGCAATCGCTTCCGTGCTGACGATCATCTGGACCGCTATCAGAATAGTCGAGACGGATACCGTGCAGCGCCTCCTT GGCAAGAAATAGGAGGCCGC
Downstream 100 bases:
>100_bases ACCCTGACGCATACCTGTTCTGGCTTGGCGCAGATGCGGAGCAAGCCTTTTGGGAAGCCTTGCAGGACTGCGGGGTAATC GAGGTCGATCTAGCGGACCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MSVDPKLLDYCNTDHQRQIMQRLIAGDSGAEIARDMGVHRTLPDKVRRRVLEYAARQGYAPEAGIDHPVAEGFELRGYSH FTKTAAGEPIWLKTRAAERAYWQGIQGAIDGVQPVDAAILAIPPEPQSDIIPWLQIGDAHIGMLASEEETGANFDISIAE REICAAAAALIDAAPACERLVINDLGDGTHYETFKAETEASGHRVDQDTRYWKMVQAYIRITRFIVERALTKARTVDYIA NQGNHSRSNDIWIAALIGALYEATGRVNVLRNESPFIAYRMGRTFVMVHHGDKAKPEACAKLMSDDYAVDWGETVFRYID GGHVHHSQRKELPGCLFESWNNLAPRDKYAHDGGWRSKQCMTLVLRSRNYGETARIVMPIERVRDLIRAKQPDHYVPPAM RAFAA
Sequences:
>Translated_405_residues MSVDPKLLDYCNTDHQRQIMQRLIAGDSGAEIARDMGVHRTLPDKVRRRVLEYAARQGYAPEAGIDHPVAEGFELRGYSH FTKTAAGEPIWLKTRAAERAYWQGIQGAIDGVQPVDAAILAIPPEPQSDIIPWLQIGDAHIGMLASEEETGANFDISIAE REICAAAAALIDAAPACERLVINDLGDGTHYETFKAETEASGHRVDQDTRYWKMVQAYIRITRFIVERALTKARTVDYIA NQGNHSRSNDIWIAALIGALYEATGRVNVLRNESPFIAYRMGRTFVMVHHGDKAKPEACAKLMSDDYAVDWGETVFRYID GGHVHHSQRKELPGCLFESWNNLAPRDKYAHDGGWRSKQCMTLVLRSRNYGETARIVMPIERVRDLIRAKQPDHYVPPAM RAFAA >Mature_404_residues SVDPKLLDYCNTDHQRQIMQRLIAGDSGAEIARDMGVHRTLPDKVRRRVLEYAARQGYAPEAGIDHPVAEGFELRGYSHF TKTAAGEPIWLKTRAAERAYWQGIQGAIDGVQPVDAAILAIPPEPQSDIIPWLQIGDAHIGMLASEEETGANFDISIAER EICAAAAALIDAAPACERLVINDLGDGTHYETFKAETEASGHRVDQDTRYWKMVQAYIRITRFIVERALTKARTVDYIAN QGNHSRSNDIWIAALIGALYEATGRVNVLRNESPFIAYRMGRTFVMVHHGDKAKPEACAKLMSDDYAVDWGETVFRYIDG GHVHHSQRKELPGCLFESWNNLAPRDKYAHDGGWRSKQCMTLVLRSRNYGETARIVMPIERVRDLIRAKQPDHYVPPAMR AFAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45440; Mature: 45309
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVDPKLLDYCNTDHQRQIMQRLIAGDSGAEIARDMGVHRTLPDKVRRRVLEYAARQGYA CCCCHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC PEAGIDHPVAEGFELRGYSHFTKTAAGEPIWLKTRAAERAYWQGIQGAIDGVQPVDAAIL CCCCCCCCHHCCEECCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEE AIPPEPQSDIIPWLQIGDAHIGMLASEEETGANFDISIAEREICAAAAALIDAAPACERL EECCCCCCCCCCCEEECCCHHEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCHHHHHH VINDLGDGTHYETFKAETEASGHRVDQDTRYWKMVQAYIRITRFIVERALTKARTVDYIA HHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NQGNHSRSNDIWIAALIGALYEATGRVNVLRNESPFIAYRMGRTFVMVHHGDKAKPEACA CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCEEEEEECCCCCCHHHHH KLMSDDYAVDWGETVFRYIDGGHVHHSQRKELPGCLFESWNNLAPRDKYAHDGGWRSKQC HHHCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHH MTLVLRSRNYGETARIVMPIERVRDLIRAKQPDHYVPPAMRAFAA HHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHCC >Mature Secondary Structure SVDPKLLDYCNTDHQRQIMQRLIAGDSGAEIARDMGVHRTLPDKVRRRVLEYAARQGYA CCCHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC PEAGIDHPVAEGFELRGYSHFTKTAAGEPIWLKTRAAERAYWQGIQGAIDGVQPVDAAIL CCCCCCCCHHCCEECCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEE AIPPEPQSDIIPWLQIGDAHIGMLASEEETGANFDISIAEREICAAAAALIDAAPACERL EECCCCCCCCCCCEEECCCHHEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCHHHHHH VINDLGDGTHYETFKAETEASGHRVDQDTRYWKMVQAYIRITRFIVERALTKARTVDYIA HHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NQGNHSRSNDIWIAALIGALYEATGRVNVLRNESPFIAYRMGRTFVMVHHGDKAKPEACA CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCEEEEEECCCCCCHHHHH KLMSDDYAVDWGETVFRYIDGGHVHHSQRKELPGCLFESWNNLAPRDKYAHDGGWRSKQC HHHCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHH MTLVLRSRNYGETARIVMPIERVRDLIRAKQPDHYVPPAMRAFAA HHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA