| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201000
Identifier: 87201000
GI number: 87201000
Start: 3204101
End: 3206242
Strand: Reverse
Name: 87201000
Synonym: Saro_2988
Alternate gene names: NA
Gene position: 3206242-3204101 (Counterclockwise)
Preceding gene: 87201001
Following gene: 87200999
Centisome position: 90.02
GC content: 62.14
Gene sequence:
>2142_bases ATGAGCCGTGCGATCTATAACAACGCAGGACCAAACGCGCCTTCGGTGGACCTTATCGCAGGCCCCGAGTTCCGCGACGA CTTCAGTACGGATGGCAACCTCAACGGGCGCACCGGATGGACCGTGGAAACGCGCCCGACCTTCTCCGGACAGGTCAATG CCATCTCGGCCAGTGGCGGCAAGGCTGGCGGCACGACCGGCAGCGCGGCCTTTGCCCTGCACACCGCCAGCGTTGAAACG GCGCGGGTGCAGTTCAAGATTGGCGCATACGGTGCGGCCCTGCATCACCATGTCAATATCGCGGCGGTCGATGCAGAACG AGACTGGCTGAATATCAACGTTGCCACTCAAGTTTCGAGCGGACTCCAGACTGGAACGATCACCTTTGCCAAGGTGGTCA ACGGGGCCTCGGCTTCTAACATCGCGATCCTTCAGCAGTGGCGCACCGAACTTGGCGACACGCTCGAAAGCGATTTTACC GAAGTTGCTGGGGTGAAATACTGGACCTGCTACCTCAATGGCCAGCAGGCGGGCGCGCCGGTCGATATCACCTCGTGGGG CGGTGCGTTCACAAAGAAGCACGGCATCATCGGTAACATCGCAAGTTCTACCGACAGCTTCCAGATCGTGGACCCGGCAA CGCAAGTCGCCTTGCGCCTCTACATGCCGAACCGCACGATCTACCGCAACGCGAACGGCTCGGTTACGTGGTTCGTAAAG GCGTACTACACCGGTCCTGATCCTTCGGGCCTCTATGCCACGGTCTATGACCTTTCGTCTGGTTCGGAAGTCGCGGTATC CGGCCTGACGGACGTTGCCTTGTCGAGCTTCGCGGCGGCAGGCGGCACGGCAACGGGGACGCTTTCCGGCACCTCGTCGC AGGTTTCCAGCGGCGGGCCGTTCTTCGTTCGTGTCACCCGCAAGCGGCTCTCTGCCCTGATTGGCAACGCAACCTGTGTT GTGGACGGGCCCTATCAAACTGTTGGCGAAACCGATCTTGCGAATGGCCAGTCGCTCGCAGTGGCCGCGTTCTCGCAGAC CGCCACCACCGCGACCTATGCGCAGCCGTCGAATTGCTGGCACCTCGAAGGCGTCCCGACCAACGGCACGACCTTGGGGG ATGCATGGAACCGCCGCCTTCGCCCGATCAGCGGCAACACCACAGCCGCCGCGCTGGCCAACGTGGTCAAGACCGTCTCC AGTGTAAACTTGACCGTTGCCAGTGGCGGCGTTTCGGGCACGGCGATTGCCGTTCGCGGGGCCGGTTCGGTCTGCCAACA GGCGCTCAAGCAGTCCATCGACCGCGCTGGTGGCAGGGTTCACTTTGTCCATCACGTTGACGGCCAATCGGACGTAACGA CTGCGCAGGCCAGTTACATCGCCGCAATTCAGGCGATCTATGACGACCTCGACGCCTACAACGGCGCAGCGATCAAGGTG CTGATGCATCCGCTTGCCTCGTGCTGGAAGAACAGCACCGGCAACGACGAGCAGTGGCAGGCCGTTCGCCGGATGCAATG GCAGCTGACGCAGGATTACCCCTCGCGCTACTTCTTGGGGGCCTATACCCTCGACTGCCAGCACTTCGACAGCCTGCACT TTAACGACGCTGGTTATGCGACAATGCTGACTCGCGCAGGGTGGGCACGGGCCAAGGCTCGCGGTGACGTGGCCAACGAC CGCAACGGGCCTTCGCTCTACAGCGTAACCCGCGTCGATGCGCAGACGGTCTATTGCGTTTACGACCTCAACGGCGCGGA TAGCCTTGAGCTGGCGAACACGGCCTACGCCAGCGAATATCACGGCGGCATGTCGTTCTCGACCGCTGCCACCAAGAGCG GCGGCACCATCGCGACGAAGCTCTATCCGACCGGCGCTACCGTGGATGCATCACCGGCAGGCGGGCGGCAGGGCATCACC TTCACCTTCGCCGCGAACACGTTCCCCGGCACGGTCTACGCGTGGGCGGCATACGGCAAGAACCCGTTCAACCCGAACGA CAACAACACCAACACCGACCCGATCAATCTCGACATGGCCAACAAGGCATCGATGATCCGGGGTGTCTATTCGGACGGCA TGAAGGTGGCGTTGCGGCCCCGGTTCACGACCGACAGCCTCGATTACCTGAGTGCATCGTGA
Upstream 100 bases:
>100_bases CTAGCATCGCCATAGCAGCGAATGCCCGCGTCGCCATCCAGATTAACAACATCACAGGCACCCCCAAGGGGCTTGCCGTC CAGCTCCTGGGGCTTCCGAC
Downstream 100 bases:
>100_bases TGAGCTTCCGCGACCTGTGGGAACACGTCCCTGACGGGCTGAAACACGCCGTAGACGCCCTTTCCATCGCCACGCTGCTA GGGAGCCTTGTCAGCATGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 713; Mature: 712
Protein sequence:
>713_residues MSRAIYNNAGPNAPSVDLIAGPEFRDDFSTDGNLNGRTGWTVETRPTFSGQVNAISASGGKAGGTTGSAAFALHTASVET ARVQFKIGAYGAALHHHVNIAAVDAERDWLNINVATQVSSGLQTGTITFAKVVNGASASNIAILQQWRTELGDTLESDFT EVAGVKYWTCYLNGQQAGAPVDITSWGGAFTKKHGIIGNIASSTDSFQIVDPATQVALRLYMPNRTIYRNANGSVTWFVK AYYTGPDPSGLYATVYDLSSGSEVAVSGLTDVALSSFAAAGGTATGTLSGTSSQVSSGGPFFVRVTRKRLSALIGNATCV VDGPYQTVGETDLANGQSLAVAAFSQTATTATYAQPSNCWHLEGVPTNGTTLGDAWNRRLRPISGNTTAAALANVVKTVS SVNLTVASGGVSGTAIAVRGAGSVCQQALKQSIDRAGGRVHFVHHVDGQSDVTTAQASYIAAIQAIYDDLDAYNGAAIKV LMHPLASCWKNSTGNDEQWQAVRRMQWQLTQDYPSRYFLGAYTLDCQHFDSLHFNDAGYATMLTRAGWARAKARGDVAND RNGPSLYSVTRVDAQTVYCVYDLNGADSLELANTAYASEYHGGMSFSTAATKSGGTIATKLYPTGATVDASPAGGRQGIT FTFAANTFPGTVYAWAAYGKNPFNPNDNNTNTDPINLDMANKASMIRGVYSDGMKVALRPRFTTDSLDYLSAS
Sequences:
>Translated_713_residues MSRAIYNNAGPNAPSVDLIAGPEFRDDFSTDGNLNGRTGWTVETRPTFSGQVNAISASGGKAGGTTGSAAFALHTASVET ARVQFKIGAYGAALHHHVNIAAVDAERDWLNINVATQVSSGLQTGTITFAKVVNGASASNIAILQQWRTELGDTLESDFT EVAGVKYWTCYLNGQQAGAPVDITSWGGAFTKKHGIIGNIASSTDSFQIVDPATQVALRLYMPNRTIYRNANGSVTWFVK AYYTGPDPSGLYATVYDLSSGSEVAVSGLTDVALSSFAAAGGTATGTLSGTSSQVSSGGPFFVRVTRKRLSALIGNATCV VDGPYQTVGETDLANGQSLAVAAFSQTATTATYAQPSNCWHLEGVPTNGTTLGDAWNRRLRPISGNTTAAALANVVKTVS SVNLTVASGGVSGTAIAVRGAGSVCQQALKQSIDRAGGRVHFVHHVDGQSDVTTAQASYIAAIQAIYDDLDAYNGAAIKV LMHPLASCWKNSTGNDEQWQAVRRMQWQLTQDYPSRYFLGAYTLDCQHFDSLHFNDAGYATMLTRAGWARAKARGDVAND RNGPSLYSVTRVDAQTVYCVYDLNGADSLELANTAYASEYHGGMSFSTAATKSGGTIATKLYPTGATVDASPAGGRQGIT FTFAANTFPGTVYAWAAYGKNPFNPNDNNTNTDPINLDMANKASMIRGVYSDGMKVALRPRFTTDSLDYLSAS >Mature_712_residues SRAIYNNAGPNAPSVDLIAGPEFRDDFSTDGNLNGRTGWTVETRPTFSGQVNAISASGGKAGGTTGSAAFALHTASVETA RVQFKIGAYGAALHHHVNIAAVDAERDWLNINVATQVSSGLQTGTITFAKVVNGASASNIAILQQWRTELGDTLESDFTE VAGVKYWTCYLNGQQAGAPVDITSWGGAFTKKHGIIGNIASSTDSFQIVDPATQVALRLYMPNRTIYRNANGSVTWFVKA YYTGPDPSGLYATVYDLSSGSEVAVSGLTDVALSSFAAAGGTATGTLSGTSSQVSSGGPFFVRVTRKRLSALIGNATCVV DGPYQTVGETDLANGQSLAVAAFSQTATTATYAQPSNCWHLEGVPTNGTTLGDAWNRRLRPISGNTTAAALANVVKTVSS VNLTVASGGVSGTAIAVRGAGSVCQQALKQSIDRAGGRVHFVHHVDGQSDVTTAQASYIAAIQAIYDDLDAYNGAAIKVL MHPLASCWKNSTGNDEQWQAVRRMQWQLTQDYPSRYFLGAYTLDCQHFDSLHFNDAGYATMLTRAGWARAKARGDVANDR NGPSLYSVTRVDAQTVYCVYDLNGADSLELANTAYASEYHGGMSFSTAATKSGGTIATKLYPTGATVDASPAGGRQGITF TFAANTFPGTVYAWAAYGKNPFNPNDNNTNTDPINLDMANKASMIRGVYSDGMKVALRPRFTTDSLDYLSAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75081; Mature: 74949
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRAIYNNAGPNAPSVDLIAGPEFRDDFSTDGNLNGRTGWTVETRPTFSGQVNAISASGG CCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCC KAGGTTGSAAFALHTASVETARVQFKIGAYGAALHHHVNIAAVDAERDWLNINVATQVSS CCCCCCCCEEEEEEECCCEEEEEEEEECCEEEEHEEEEEEEEEECCCCEEEEEEEEHHCC GLQTGTITFAKVVNGASASNIAILQQWRTELGDTLESDFTEVAGVKYWTCYLNGQQAGAP CCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEEEEEECCCCCCCC VDITSWGGAFTKKHGIIGNIASSTDSFQIVDPATQVALRLYMPNRTIYRNANGSVTWFVK EEEECCCCCHHHCCCCEEEECCCCCCEEEECCHHEEEEEEECCCCEEEECCCCCEEEEEE AYYTGPDPSGLYATVYDLSSGSEVAVSGLTDVALSSFAAAGGTATGTLSGTSSQVSSGGP EEECCCCCCCCEEEEEECCCCCEEEECCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC FFVRVTRKRLSALIGNATCVVDGPYQTVGETDLANGQSLAVAAFSQTATTATYAQPSNCW EEEEEEHHHHHHHHCCCEEEECCCCHHCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCE HLEGVPTNGTTLGDAWNRRLRPISGNTTAAALANVVKTVSSVNLTVASGGVSGTAIAVRG EEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCCEEEEEEC AGSVCQQALKQSIDRAGGRVHFVHHVDGQSDVTTAQASYIAAIQAIYDDLDAYNGAAIKV CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH LMHPLASCWKNSTGNDEQWQAVRRMQWQLTQDYPSRYFLGAYTLDCQHFDSLHFNDAGYA HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHCCCEEECCCCHH TMLTRAGWARAKARGDVANDRNGPSLYSVTRVDAQTVYCVYDLNGADSLELANTAYASEY HHHHHCCCHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCEEHHHHHHHHHH HGGMSFSTAATKSGGTIATKLYPTGATVDASPAGGRQGITFTFAANTFPGTVYAWAAYGK CCCCEEECCCCCCCCEEEEEEECCCCEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCC NPFNPNDNNTNTDPINLDMANKASMIRGVYSDGMKVALRPRFTTDSLDYLSAS CCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCC >Mature Secondary Structure SRAIYNNAGPNAPSVDLIAGPEFRDDFSTDGNLNGRTGWTVETRPTFSGQVNAISASGG CCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCC KAGGTTGSAAFALHTASVETARVQFKIGAYGAALHHHVNIAAVDAERDWLNINVATQVSS CCCCCCCCEEEEEEECCCEEEEEEEEECCEEEEHEEEEEEEEEECCCCEEEEEEEEHHCC GLQTGTITFAKVVNGASASNIAILQQWRTELGDTLESDFTEVAGVKYWTCYLNGQQAGAP CCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEEEEEECCCCCCCC VDITSWGGAFTKKHGIIGNIASSTDSFQIVDPATQVALRLYMPNRTIYRNANGSVTWFVK EEEECCCCCHHHCCCCEEEECCCCCCEEEECCHHEEEEEEECCCCEEEECCCCCEEEEEE AYYTGPDPSGLYATVYDLSSGSEVAVSGLTDVALSSFAAAGGTATGTLSGTSSQVSSGGP EEECCCCCCCCEEEEEECCCCCEEEECCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC FFVRVTRKRLSALIGNATCVVDGPYQTVGETDLANGQSLAVAAFSQTATTATYAQPSNCW EEEEEEHHHHHHHHCCCEEEECCCCHHCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCE HLEGVPTNGTTLGDAWNRRLRPISGNTTAAALANVVKTVSSVNLTVASGGVSGTAIAVRG EEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCCEEEEEEC AGSVCQQALKQSIDRAGGRVHFVHHVDGQSDVTTAQASYIAAIQAIYDDLDAYNGAAIKV CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH LMHPLASCWKNSTGNDEQWQAVRRMQWQLTQDYPSRYFLGAYTLDCQHFDSLHFNDAGYA HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHCCCEEECCCCHH TMLTRAGWARAKARGDVANDRNGPSLYSVTRVDAQTVYCVYDLNGADSLELANTAYASEY HHHHHCCCHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCEEHHHHHHHHHH HGGMSFSTAATKSGGTIATKLYPTGATVDASPAGGRQGITFTFAANTFPGTVYAWAAYGK CCCCEEECCCCCCCCEEEEEEECCCCEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCC NPFNPNDNNTNTDPINLDMANKASMIRGVYSDGMKVALRPRFTTDSLDYLSAS CCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA