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The map label for this gene is pdtaR [H]

Identifier: 87200985

GI number: 87200985

Start: 3194160

End: 3194813

Strand: Reverse

Name: pdtaR [H]

Synonym: Saro_2973

Alternate gene names: 87200985

Gene position: 3194813-3194160 (Counterclockwise)

Preceding gene: 87200986

Following gene: 87200984

Centisome position: 89.7

GC content: 64.53

Gene sequence:

>654_bases
TTGCCGGGCTATCTTCCACGGCATGACGGGAACTCCCCGCTTGTCCCCGCGCTTGTTGCAGTGCACAATGACATGATGCG
CATTGCCATCGTCGACGAAAGCGCCATGCGCGCGGCGGTTATCCAGGAAGGGCTGGCCGCGATCGGCGAGTGCGAGATCT
TCGTCGTGACCGAAAGGCGCGGACTGGTCGCCCGCATCGGCGAGATCGCGCCCGATATCGTGCTGATGGATCTCGGCAAC
CCGTCGCGCGACGTTCTCGAGGAGTACTTCGCGGTGAGCCGCGTGCTCGACCGGCCGATTGCAATGTTCGTTGACGAATC
GGACGAGGAATCGATCGCCGCTTCGGTCGACGCGGGAGTTTCGGCCTATGTGGTGGACGGGCTTGCGCCCCACCGCATAC
GCCCGCTGCTCGATCTGGCGGTGCGGCGGTTCAACGCCTTTGCGCGGTTGCAGGCGGATCTTGCCGACGCGCAGAGCCAG
CTTGCCCAGCGCGACGCGATCGACAAGGCCAAGCGCATCCTGATGGACAGCCGGGGGCTTTCCGAACCCCAGGCCTATGC
CGAACTGCGCAAGGCGGCGATGAACCAGAGCAAGCGGATCGCCGATATCGCCGAAGCCGTTGTCACGGCGCACAAGCTCA
TGGGAGGCGAATGA

Upstream 100 bases:

>100_bases
GTGATCGAGGCAGGCGGGACCGAGGCGGACCTGAGGCAGGCGCACGACCTGCACGGGCCGAGGGCCGTGGCGGCCGGGCG
CCGGATGATCGGTGAATGGG

Downstream 100 bases:

>100_bases
TGGGCGCGGAACTCGCGATAGGCTTTCTGCCGCTGGTCGATGCGTGCCTGCCGATCCTGGCGCGCGAACATGGCTTTGCC
GAGGCGGAAGGAATCTCGCT

Product: response regulator receiver/ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MPGYLPRHDGNSPLVPALVAVHNDMMRIAIVDESAMRAAVIQEGLAAIGECEIFVVTERRGLVARIGEIAPDIVLMDLGN
PSRDVLEEYFAVSRVLDRPIAMFVDESDEESIAASVDAGVSAYVVDGLAPHRIRPLLDLAVRRFNAFARLQADLADAQSQ
LAQRDAIDKAKRILMDSRGLSEPQAYAELRKAAMNQSKRIADIAEAVVTAHKLMGGE

Sequences:

>Translated_217_residues
MPGYLPRHDGNSPLVPALVAVHNDMMRIAIVDESAMRAAVIQEGLAAIGECEIFVVTERRGLVARIGEIAPDIVLMDLGN
PSRDVLEEYFAVSRVLDRPIAMFVDESDEESIAASVDAGVSAYVVDGLAPHRIRPLLDLAVRRFNAFARLQADLADAQSQ
LAQRDAIDKAKRILMDSRGLSEPQAYAELRKAAMNQSKRIADIAEAVVTAHKLMGGE
>Mature_216_residues
PGYLPRHDGNSPLVPALVAVHNDMMRIAIVDESAMRAAVIQEGLAAIGECEIFVVTERRGLVARIGEIAPDIVLMDLGNP
SRDVLEEYFAVSRVLDRPIAMFVDESDEESIAASVDAGVSAYVVDGLAPHRIRPLLDLAVRRFNAFARLQADLADAQSQL
AQRDAIDKAKRILMDSRGLSEPQAYAELRKAAMNQSKRIADIAEAVVTAHKLMGGE

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23586; Mature: 23455

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGYLPRHDGNSPLVPALVAVHNDMMRIAIVDESAMRAAVIQEGLAAIGECEIFVVTERR
CCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCC
GLVARIGEIAPDIVLMDLGNPSRDVLEEYFAVSRVLDRPIAMFVDESDEESIAASVDAGV
CHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHCCC
SAYVVDGLAPHRIRPLLDLAVRRFNAFARLQADLADAQSQLAQRDAIDKAKRILMDSRGL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SEPQAYAELRKAAMNQSKRIADIAEAVVTAHKLMGGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PGYLPRHDGNSPLVPALVAVHNDMMRIAIVDESAMRAAVIQEGLAAIGECEIFVVTERR
CCCCCCCCCCCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCC
GLVARIGEIAPDIVLMDLGNPSRDVLEEYFAVSRVLDRPIAMFVDESDEESIAASVDAGV
CHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHCCC
SAYVVDGLAPHRIRPLLDLAVRRFNAFARLQADLADAQSQLAQRDAIDKAKRILMDSRGL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SEPQAYAELRKAAMNQSKRIADIAEAVVTAHKLMGGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]