Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

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The map label for this gene is yfeJ [H]

Identifier: 87200986

GI number: 87200986

Start: 3194788

End: 3195495

Strand: Reverse

Name: yfeJ [H]

Synonym: Saro_2974

Alternate gene names: 87200986

Gene position: 3195495-3194788 (Counterclockwise)

Preceding gene: 87200987

Following gene: 87200985

Centisome position: 89.72

GC content: 67.37

Gene sequence:

>708_bases
ATGAAGCGGGCCCTCATCATCCGCCACGTGCCCTACGAAGGCGTCGCCGGTTTTCGGCAGCCGATCGAGGATGCCGGATA
CGAGGTCGACCGCATCGATGTGGCCGATCCGGCGTTCTCCAGCCTGGACCTGCGCGAGCCCGACCTGCTGATCATGATGG
GCGGGCCGATGGGCGTCTACGAGCAGGATCGCCATCCCTGGATCGCCTGCCAGCTGCGCCGGTTGCGCCAGCGGCTGGAG
GCCGACCGACCGACGCTGGGCGTCTGCTTCGGCGCGCAGATGATGGCCGCGGCCCTTGGGGCGGAAGTCTATCCGGGGCC
GGCGAAGGAAGTGGGCTTTCATCCGGTGCGCGTTCACGATCACGCGTTGGACGGACCATTGCGGCACATCGTCGACGTGC
CCGTGCTCCACTGGCACGGCGATACCTTCACCGTGCCGGACAACGTCGAGTTGCTGGCGTCGAGCCATGTCTACGAACAC
CAGGCCTTCCGGCGCGGCAGGAACCTGCTGGCGTTGCAGTTCCATGCCGAGATGGGTGAGGACGAGCGGTTCAATGCCTG
GATCGAGGAATGGCCCGAGTCGGTGATCGAGGCAGGCGGGACCGAGGCGGACCTGAGGCAGGCGCACGACCTGCACGGGC
CGAGGGCCGTGGCGGCCGGGCGCCGGATGATCGGTGAATGGGTTGCCGGGCTATCTTCCACGGCATGA

Upstream 100 bases:

>100_bases
ACGGCTAAAGCGCGCGAAACGGTGCCGTTGTCGCCGATTTCGTGATCCGTGGCGGGAGAAACGAAATGTACGAGCGTGAC
TTGCAGTTTACGGGGGCGGC

Downstream 100 bases:

>100_bases
CGGGAACTCCCCGCTTGTCCCCGCGCTTGTTGCAGTGCACAATGACATGATGCGCATTGCCATCGTCGACGAAAGCGCCA
TGCGCGCGGCGGTTATCCAG

Product: glutamine amidotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKRALIIRHVPYEGVAGFRQPIEDAGYEVDRIDVADPAFSSLDLREPDLLIMMGGPMGVYEQDRHPWIACQLRRLRQRLE
ADRPTLGVCFGAQMMAAALGAEVYPGPAKEVGFHPVRVHDHALDGPLRHIVDVPVLHWHGDTFTVPDNVELLASSHVYEH
QAFRRGRNLLALQFHAEMGEDERFNAWIEEWPESVIEAGGTEADLRQAHDLHGPRAVAAGRRMIGEWVAGLSSTA

Sequences:

>Translated_235_residues
MKRALIIRHVPYEGVAGFRQPIEDAGYEVDRIDVADPAFSSLDLREPDLLIMMGGPMGVYEQDRHPWIACQLRRLRQRLE
ADRPTLGVCFGAQMMAAALGAEVYPGPAKEVGFHPVRVHDHALDGPLRHIVDVPVLHWHGDTFTVPDNVELLASSHVYEH
QAFRRGRNLLALQFHAEMGEDERFNAWIEEWPESVIEAGGTEADLRQAHDLHGPRAVAAGRRMIGEWVAGLSSTA
>Mature_235_residues
MKRALIIRHVPYEGVAGFRQPIEDAGYEVDRIDVADPAFSSLDLREPDLLIMMGGPMGVYEQDRHPWIACQLRRLRQRLE
ADRPTLGVCFGAQMMAAALGAEVYPGPAKEVGFHPVRVHDHALDGPLRHIVDVPVLHWHGDTFTVPDNVELLASSHVYEH
QAFRRGRNLLALQFHAEMGEDERFNAWIEEWPESVIEAGGTEADLRQAHDLHGPRAVAAGRRMIGEWVAGLSSTA

Specific function: Unknown

COG id: COG0518

COG function: function code F; GMP synthase - Glutamine amidotransferase domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glutamine amidotransferase type-1 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017926
- InterPro:   IPR000991 [H]

Pfam domain/function: PF00117 GATase [H]

EC number: NA

Molecular weight: Translated: 26260; Mature: 26260

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS00442 GATASE_TYPE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRALIIRHVPYEGVAGFRQPIEDAGYEVDRIDVADPAFSSLDLREPDLLIMMGGPMGVY
CCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCC
EQDRHPWIACQLRRLRQRLEADRPTLGVCFGAQMMAAALGAEVYPGPAKEVGFHPVRVHD
CCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCCHHHCCCCCEEECC
HALDGPLRHIVDVPVLHWHGDTFTVPDNVELLASSHVYEHQAFRRGRNLLALQFHAEMGE
CCCCCHHHHHHCCCEEEECCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
DERFNAWIEEWPESVIEAGGTEADLRQAHDLHGPRAVAAGRRMIGEWVAGLSSTA
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRALIIRHVPYEGVAGFRQPIEDAGYEVDRIDVADPAFSSLDLREPDLLIMMGGPMGVY
CCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCC
EQDRHPWIACQLRRLRQRLEADRPTLGVCFGAQMMAAALGAEVYPGPAKEVGFHPVRVHD
CCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCCHHHCCCCCEEECC
HALDGPLRHIVDVPVLHWHGDTFTVPDNVELLASSHVYEHQAFRRGRNLLALQFHAEMGE
CCCCCHHHHHHCCCEEEECCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
DERFNAWIEEWPESVIEAGGTEADLRQAHDLHGPRAVAAGRRMIGEWVAGLSSTA
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7612925; 11677609 [H]