| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200873
Identifier: 87200873
GI number: 87200873
Start: 3083086
End: 3083970
Strand: Reverse
Name: 87200873
Synonym: Saro_2860
Alternate gene names: NA
Gene position: 3083970-3083086 (Counterclockwise)
Preceding gene: 87200874
Following gene: 87200872
Centisome position: 86.59
GC content: 67.23
Gene sequence:
>885_bases ATGGCCAAGGCATCGCTCATCCATCCCAACTGGGACAAGGCGCCCGACGGGATCACCGATGGCTTTTCGCTGGAGATGAC GGCGAAGGACGAGGCGTCGCTGCGCGATGCCGCTCCGCTCATCCCGGCAGACACCCCCATCGCGGTCACCTTCCTCCCCG GCGAGGATGTGGCCGCCCGCGTTGCCGCCACCGTCGCGGTGCGCCAGCTCGGCTTCGAGCCGATGCCCCATTTCTCCGCC CGCCGGATCACTTCCGAGGACGATTTCGAAGGCTACCTCAAGGCCGTGGTCGAACAGGCCGGCGTAGAGCGCTGCTTCAT CGTCGCGGGCGATCCGCCCGAGCCGGTTGGCCCCTACTTCGATACCTCGGCGCTCATCGCCACCGGTGCATTCGAGCGCA GCGGCATCAAGGCCATCGGCATCGGCGGGCACCCCGAAGGCCACCCGAACATGACCGAGGCCGAATGCTGGGCGGTCCTC GAGAAGAAGGTCGCGGAAATCGAGCGTCGCGGCATGGCCCCGCTGATCGTCACCCAGTTCGGTTTCGATCCCGACGCTTT CCTCGCCTGGCTCAAGGAACTGCGCGCGCGCGGCATCGATGCGCCGGTCCGCATCGGCGTTCCCGGTCCTGCCGGGATCA AGCGTCTGCTTGCCTTCGCCGCCCGCTGCGGCGTCGGCGCCTCGACCGCCGTGCTCAAGAAGTACGGCATATCGGTCACG AACCTGCTCGGCACCGCCGGGCCGGACAAGCTGGTCGATGCCTTCGCCAAGGGCCTCGGCCCCGAACACGGCAAGGTCCG CCTGCACTTCTATCCCTTCGGCGGCCTGACCAAGACGCTCGAATGGATCCACGGCTACAACAAGAAGCACGGCATCGGAG CCTGA
Upstream 100 bases:
>100_bases GCCGAAGGCTGGCGCACCGCTCGCTAAGGCAGACCCGCGCCGCCCGGACCGCCACAATGGCGGCCGGGCGGACCGGTTTC ATCAACAGAGGATCCCGAAC
Downstream 100 bases:
>100_bases CGATGACTGACTTCGTCCTCGTGCACGGCGCATGGGGCGGCAGCTTCGCGTGGGATCGGCTAAAGGCTGATCTCGTCGCG GCCGGTCATCGCGTCCTCGC
Product: methylenetetrahydrofolate reductase
Products: NA
Alternate protein names: 5 10-Methylenetetrahydrofolate Reductase; Methylenetetrahydrofolate Reductase Family Protein; Metfprotein-Like; MetF-Like Protein; Metfprotein -Like Protein
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MAKASLIHPNWDKAPDGITDGFSLEMTAKDEASLRDAAPLIPADTPIAVTFLPGEDVAARVAATVAVRQLGFEPMPHFSA RRITSEDDFEGYLKAVVEQAGVERCFIVAGDPPEPVGPYFDTSALIATGAFERSGIKAIGIGGHPEGHPNMTEAECWAVL EKKVAEIERRGMAPLIVTQFGFDPDAFLAWLKELRARGIDAPVRIGVPGPAGIKRLLAFAARCGVGASTAVLKKYGISVT NLLGTAGPDKLVDAFAKGLGPEHGKVRLHFYPFGGLTKTLEWIHGYNKKHGIGA
Sequences:
>Translated_294_residues MAKASLIHPNWDKAPDGITDGFSLEMTAKDEASLRDAAPLIPADTPIAVTFLPGEDVAARVAATVAVRQLGFEPMPHFSA RRITSEDDFEGYLKAVVEQAGVERCFIVAGDPPEPVGPYFDTSALIATGAFERSGIKAIGIGGHPEGHPNMTEAECWAVL EKKVAEIERRGMAPLIVTQFGFDPDAFLAWLKELRARGIDAPVRIGVPGPAGIKRLLAFAARCGVGASTAVLKKYGISVT NLLGTAGPDKLVDAFAKGLGPEHGKVRLHFYPFGGLTKTLEWIHGYNKKHGIGA >Mature_293_residues AKASLIHPNWDKAPDGITDGFSLEMTAKDEASLRDAAPLIPADTPIAVTFLPGEDVAARVAATVAVRQLGFEPMPHFSAR RITSEDDFEGYLKAVVEQAGVERCFIVAGDPPEPVGPYFDTSALIATGAFERSGIKAIGIGGHPEGHPNMTEAECWAVLE KKVAEIERRGMAPLIVTQFGFDPDAFLAWLKELRARGIDAPVRIGVPGPAGIKRLLAFAARCGVGASTAVLKKYGISVTN LLGTAGPDKLVDAFAKGLGPEHGKVRLHFYPFGGLTKTLEWIHGYNKKHGIGA
Specific function: Unknown
COG id: COG0685
COG function: function code E; 5,10-methylenetetrahydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31291; Mature: 31160
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00133 CARBOXYPEPT_ZN_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKASLIHPNWDKAPDGITDGFSLEMTAKDEASLRDAAPLIPADTPIAVTFLPGEDVAAR CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCEEEEEECCCHHHHH VAATVAVRQLGFEPMPHFSARRITSEDDFEGYLKAVVEQAGVERCFIVAGDPPEPVGPYF HHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC DTSALIATGAFERSGIKAIGIGGHPEGHPNMTEAECWAVLEKKVAEIERRGMAPLIVTQF CCHHHHHCCCHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC GFDPDAFLAWLKELRARGIDAPVRIGVPGPAGIKRLLAFAARCGVGASTAVLKKYGISVT CCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHH NLLGTAGPDKLVDAFAKGLGPEHGKVRLHFYPFGGLTKTLEWIHGYNKKHGIGA HHHCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure AKASLIHPNWDKAPDGITDGFSLEMTAKDEASLRDAAPLIPADTPIAVTFLPGEDVAAR CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCEEEEEECCCHHHHH VAATVAVRQLGFEPMPHFSARRITSEDDFEGYLKAVVEQAGVERCFIVAGDPPEPVGPYF HHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC DTSALIATGAFERSGIKAIGIGGHPEGHPNMTEAECWAVLEKKVAEIERRGMAPLIVTQF CCHHHHHCCCHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC GFDPDAFLAWLKELRARGIDAPVRIGVPGPAGIKRLLAFAARCGVGASTAVLKKYGISVT CCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHH NLLGTAGPDKLVDAFAKGLGPEHGKVRLHFYPFGGLTKTLEWIHGYNKKHGIGA HHHCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA