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The map label for this gene is clpB [H]

Identifier: 87200837

GI number: 87200837

Start: 3048765

End: 3051344

Strand: Reverse

Name: clpB [H]

Synonym: Saro_2824

Alternate gene names: 87200837

Gene position: 3051344-3048765 (Counterclockwise)

Preceding gene: 87200838

Following gene: 87200836

Centisome position: 85.67

GC content: 66.9

Gene sequence:

>2580_bases
ATGAACCTCGAGAAATTCACCGACCGCGCCAAGGGCTTCCTGCAGGCCGCGCAGACCGTTGCGATCCGCATGAACCACCA
GCGGATCACGCCCGACCACATCCTCAAGGCCCTGCTGGAAGACAGCGAGGGCATGGCCAGTGGCCTGATCCAGCGCGCGG
GCGGCAATGCCGCCCTGGCGCAGACCGAAGTCGACAAGGCGCTGGCGAAGATCCCGGCGGTGTCCGGTTCGGGTGCCCAG
GCGACGCCGGGGCTCGACAACGATGCCGTGCGCGTGCTCGATTCCGCCGAGCAGATCGCGGCCAAGTCCAACGACAGCTT
CGTCACCGTCGAGCGCATGCTCGTCGCGCTGACGCTCGCCACCACGACGTCGGCGGGGCAGGCGCTCAAGGCCGCGAACG
TGACCGCGCAGGCGCTGGAAGCGGCGATCACGCAGCTTCGCGGCGGTCGCACGGCGGACAGCGCGAGCGCGGAAAACGCC
TATGACGCGATGAAGAAGTACGCGCGCGACCTGACCGAGGCGGCGCGCGAGGGCAAGCTCGACCCGGTGATCGGCCGTGA
CGAGGAGATCCGCCGCACCGTGCAGATCCTCGCCCGGCGCACCAAGAACAACCCGGCGCTGATCGGCGAGCCGGGCGTTG
GCAAGACCGCGATCGCCGAAGGCCTCGCGCTGCGCATCGCCAATGGCGACGTGCCGGATTCGCTGAAGGACCGCCGCCTC
ATGGCGCTCGACATGGGTTCGCTCATTGCCGGTGCGAAGTATCGCGGCGAGTTCGAGGAGCGCCTGAAGGCCGTGCTCGA
CGAGGTGAAGGGCGCGGAAGGCGAGATCATCCTGTTCATCGACGAGATGCACACCCTGATCGGGGCGGGCAAGAGCGAGG
GCGCGATGGACGCGGGCAACCTGCTCAAGCCAGCCCTGGCGCGCGGCGAACTGCACTGCATCGGCGCGACGACGCTGGAC
GAGTACCAGAAGTACGTCGAGAAGGACCCCGCGCTGCAGCGGCGGTTCCAGCCGGTATTCGTGGGCGAGCCGACCGTCGA
GGACACGATCAGCATCCTGCGCGGCATCAAGGACAAGTACGAGCTGCACCACGGCGTACGCATTGCCGACAATGCGATCG
TGGCTGCGGCGACGCTTTCGAACCGCTACATCTCCGACCGCTTCCTGCCCGACAAGGCCATCGACCTGATGGACGAGGCG
GCGAGCCGCATCCGCATGGAAGTGGAAAGCAAGCCCGAGGAAATCGAGAAGCTCGACCGGCGCATCATCCAGATGAAGAT
CGAGGAGATGGCGCTTGCGAAGGAGACCGACCAGGCGTCGAAGGACCGGCTGGCGACCCTGCGCGAGGAACTGGCGAACC
AGGAGCAGCAATCGGCCGAGCTGACCACCCGCTGGCAGAACGAGCGCGACAAGATCGCCGCCGAGGGCAAGGTCAAGGAA
GCGCTGGATGCGGCGCGCAGCGAGCTGGAGGTGGCGCAGCGCAACGGCGACCTGGCGAAGGCCGGCGAGCTTGCCTATGG
CCGCATTCCCGAGCTTGAGCGGCAACTGGCCGAAGCGCAGGGCGTGAGCCAGAACGCGATGCTGCGCGAGGAAGTGACCG
CCGAGGACATCGCCGCCGTCGTCAGCAAGTGGACCGGCGTGCCCGTCGACCGGATGATGGAAGGCGAGCGCGAGAAGCTG
CTGCACATGGAAGAGGCGCTGGGCAAGCGCGTGATTGGTCAGAAGGATGCGGTGCTGGCCGTGTCCAAGGCCGTCCGCCG
GGCCCGCGCGGGGCTTCAGGACCCGAACCGTCCGCTGGGCAGCTTCCTGTTCCTGGGCCCCACGGGCGTGGGCAAGACCG
AGCTGACCAAGGCGCTGGCGGGCTTCCTGTTCGACGACGACAACGCGATGGTGCGCATCGACATGTCCGAGTTCATGGAA
AAGCACTCCGTCAGCCGGCTGATCGGCGCGCCTCCGGGCTATGTCGGTTACGATGAAGGCGGCGTTCTGACCGAAGCAAT
CCGCAGGCGGCCCTACCAGGTCGTGCTGTTCGACGAGGTCGAGAAGGCGCACTCGGACGTGTTCAATGTGCTGTTGCAGG
TGCTCGACGACGGGCGCCTGACCGATGGGCAGGGCCGCGTGGTGGACTTCACCAACACGCTGATCATCCTGACCAGCAAC
CTCGGCAGCCAGTACCTCGCCAATCTGGAGGAGGGGCAGGACGTGCAGAGCGTCGAGCCGCAAGTCATGGACGTCGTGCG
CGCTCATTTCCGGCCCGAGTTCCTCAACCGTCTGGACGAGATCATCCTGTTCCACCGGCTGGGCCACGAACACATGGCGC
CGATCGTCGACATCCAGGTGGGCCGCGTGGCGAACCTGCTCAAGGATCGCAAGATCGTGCTCGACCTCACCGACGCGGCC
AAGCGCTGGCTGGGACGGGTCGGCTACGACCCGGTCTATGGCGCTCGTCCGTTGAAGCGGGCCGTGCAGCGGTACTTGCA
GGACCCGCTGGCCGAAAAGCTGCTGGGCGGCGAAGTGCCCGATGGCAGCACGGTGCGGATCGACGAGGGCGATGGGGCCC
TGAGCTTCGTGATCGCATGA

Upstream 100 bases:

>100_bases
GAACCGCTTCTGTCGAGGGGTATAGCTTTTTCGTCACCGCAGCACTTGTGTTGCGAAAAAGTCACACCATGTCTTGCGCA
ACAGGAGGACACTCGATCTT

Downstream 100 bases:

>100_bases
ACGGGAAGGGGGCTGCTGCGGCGGCCCCTTTTTCGTTGGGCCGGGGCCCATGGATCGGCGGCACGGAAGCCCATCCGCTG
GCGAGTGCGGACCCTTGCGC

Product: AAA ATPase, central region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 859; Mature: 859

Protein sequence:

>859_residues
MNLEKFTDRAKGFLQAAQTVAIRMNHQRITPDHILKALLEDSEGMASGLIQRAGGNAALAQTEVDKALAKIPAVSGSGAQ
ATPGLDNDAVRVLDSAEQIAAKSNDSFVTVERMLVALTLATTTSAGQALKAANVTAQALEAAITQLRGGRTADSASAENA
YDAMKKYARDLTEAAREGKLDPVIGRDEEIRRTVQILARRTKNNPALIGEPGVGKTAIAEGLALRIANGDVPDSLKDRRL
MALDMGSLIAGAKYRGEFEERLKAVLDEVKGAEGEIILFIDEMHTLIGAGKSEGAMDAGNLLKPALARGELHCIGATTLD
EYQKYVEKDPALQRRFQPVFVGEPTVEDTISILRGIKDKYELHHGVRIADNAIVAAATLSNRYISDRFLPDKAIDLMDEA
ASRIRMEVESKPEEIEKLDRRIIQMKIEEMALAKETDQASKDRLATLREELANQEQQSAELTTRWQNERDKIAAEGKVKE
ALDAARSELEVAQRNGDLAKAGELAYGRIPELERQLAEAQGVSQNAMLREEVTAEDIAAVVSKWTGVPVDRMMEGEREKL
LHMEEALGKRVIGQKDAVLAVSKAVRRARAGLQDPNRPLGSFLFLGPTGVGKTELTKALAGFLFDDDNAMVRIDMSEFME
KHSVSRLIGAPPGYVGYDEGGVLTEAIRRRPYQVVLFDEVEKAHSDVFNVLLQVLDDGRLTDGQGRVVDFTNTLIILTSN
LGSQYLANLEEGQDVQSVEPQVMDVVRAHFRPEFLNRLDEIILFHRLGHEHMAPIVDIQVGRVANLLKDRKIVLDLTDAA
KRWLGRVGYDPVYGARPLKRAVQRYLQDPLAEKLLGGEVPDGSTVRIDEGDGALSFVIA

Sequences:

>Translated_859_residues
MNLEKFTDRAKGFLQAAQTVAIRMNHQRITPDHILKALLEDSEGMASGLIQRAGGNAALAQTEVDKALAKIPAVSGSGAQ
ATPGLDNDAVRVLDSAEQIAAKSNDSFVTVERMLVALTLATTTSAGQALKAANVTAQALEAAITQLRGGRTADSASAENA
YDAMKKYARDLTEAAREGKLDPVIGRDEEIRRTVQILARRTKNNPALIGEPGVGKTAIAEGLALRIANGDVPDSLKDRRL
MALDMGSLIAGAKYRGEFEERLKAVLDEVKGAEGEIILFIDEMHTLIGAGKSEGAMDAGNLLKPALARGELHCIGATTLD
EYQKYVEKDPALQRRFQPVFVGEPTVEDTISILRGIKDKYELHHGVRIADNAIVAAATLSNRYISDRFLPDKAIDLMDEA
ASRIRMEVESKPEEIEKLDRRIIQMKIEEMALAKETDQASKDRLATLREELANQEQQSAELTTRWQNERDKIAAEGKVKE
ALDAARSELEVAQRNGDLAKAGELAYGRIPELERQLAEAQGVSQNAMLREEVTAEDIAAVVSKWTGVPVDRMMEGEREKL
LHMEEALGKRVIGQKDAVLAVSKAVRRARAGLQDPNRPLGSFLFLGPTGVGKTELTKALAGFLFDDDNAMVRIDMSEFME
KHSVSRLIGAPPGYVGYDEGGVLTEAIRRRPYQVVLFDEVEKAHSDVFNVLLQVLDDGRLTDGQGRVVDFTNTLIILTSN
LGSQYLANLEEGQDVQSVEPQVMDVVRAHFRPEFLNRLDEIILFHRLGHEHMAPIVDIQVGRVANLLKDRKIVLDLTDAA
KRWLGRVGYDPVYGARPLKRAVQRYLQDPLAEKLLGGEVPDGSTVRIDEGDGALSFVIA
>Mature_859_residues
MNLEKFTDRAKGFLQAAQTVAIRMNHQRITPDHILKALLEDSEGMASGLIQRAGGNAALAQTEVDKALAKIPAVSGSGAQ
ATPGLDNDAVRVLDSAEQIAAKSNDSFVTVERMLVALTLATTTSAGQALKAANVTAQALEAAITQLRGGRTADSASAENA
YDAMKKYARDLTEAAREGKLDPVIGRDEEIRRTVQILARRTKNNPALIGEPGVGKTAIAEGLALRIANGDVPDSLKDRRL
MALDMGSLIAGAKYRGEFEERLKAVLDEVKGAEGEIILFIDEMHTLIGAGKSEGAMDAGNLLKPALARGELHCIGATTLD
EYQKYVEKDPALQRRFQPVFVGEPTVEDTISILRGIKDKYELHHGVRIADNAIVAAATLSNRYISDRFLPDKAIDLMDEA
ASRIRMEVESKPEEIEKLDRRIIQMKIEEMALAKETDQASKDRLATLREELANQEQQSAELTTRWQNERDKIAAEGKVKE
ALDAARSELEVAQRNGDLAKAGELAYGRIPELERQLAEAQGVSQNAMLREEVTAEDIAAVVSKWTGVPVDRMMEGEREKL
LHMEEALGKRVIGQKDAVLAVSKAVRRARAGLQDPNRPLGSFLFLGPTGVGKTELTKALAGFLFDDDNAMVRIDMSEFME
KHSVSRLIGAPPGYVGYDEGGVLTEAIRRRPYQVVLFDEVEKAHSDVFNVLLQVLDDGRLTDGQGRVVDFTNTLIILTSN
LGSQYLANLEEGQDVQSVEPQVMDVVRAHFRPEFLNRLDEIILFHRLGHEHMAPIVDIQVGRVANLLKDRKIVLDLTDAA
KRWLGRVGYDPVYGARPLKRAVQRYLQDPLAEKLLGGEVPDGSTVRIDEGDGALSFVIA

Specific function: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=352, Percent_Identity=36.0795454545455, Blast_Score=206, Evalue=6e-53,
Organism=Escherichia coli, GI1788943, Length=850, Percent_Identity=58.8235294117647, Blast_Score=1020, Evalue=0.0,
Organism=Escherichia coli, GI1787109, Length=305, Percent_Identity=46.2295081967213, Blast_Score=271, Evalue=9e-74,
Organism=Saccharomyces cerevisiae, GI6320464, Length=699, Percent_Identity=55.2217453505007, Blast_Score=787, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6323002, Length=863, Percent_Identity=43.5689455388181, Blast_Score=697, Evalue=0.0,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR018368
- InterPro:   IPR017730
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR004176
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small [H]

EC number: 3.4.21.92

Molecular weight: Translated: 94027; Mature: 94027

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLEKFTDRAKGFLQAAQTVAIRMNHQRITPDHILKALLEDSEGMASGLIQRAGGNAALA
CCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH
QTEVDKALAKIPAVSGSGAQATPGLDNDAVRVLDSAEQIAAKSNDSFVTVERMLVALTLA
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
TTTSAGQALKAANVTAQALEAAITQLRGGRTADSASAENAYDAMKKYARDLTEAAREGKL
HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
DPVIGRDEEIRRTVQILARRTKNNPALIGEPGVGKTAIAEGLALRIANGDVPDSLKDRRL
CCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHCCCEEEEECCCCCCCHHCCEE
MALDMGSLIAGAKYRGEFEERLKAVLDEVKGAEGEIILFIDEMHTLIGAGKSEGAMDAGN
HEECHHHHHHCCHHCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCH
LLKPALARGELHCIGATTLDEYQKYVEKDPALQRRFQPVFVGEPTVEDTISILRGIKDKY
HHHHHHHCCCEEEEECCCHHHHHHHHHCCHHHHHHCCCEECCCCCHHHHHHHHHHHHHHH
ELHHGVRIADNAIVAAATLSNRYISDRFLPDKAIDLMDEAASRIRMEVESKPEEIEKLDR
HHHCCCEEECCCEEEEHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RIIQMKIEEMALAKETDQASKDRLATLREELANQEQQSAELTTRWQNERDKIAAEGKVKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHCCHHHH
ALDAARSELEVAQRNGDLAKAGELAYGRIPELERQLAEAQGVSQNAMLREEVTAEDIAAV
HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VSKWTGVPVDRMMEGEREKLLHMEEALGKRVIGQKDAVLAVSKAVRRARAGLQDPNRPLG
HHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
SFLFLGPTGVGKTELTKALAGFLFDDDNAMVRIDMSEFMEKHSVSRLIGAPPGYVGYDEG
CEEEECCCCCCHHHHHHHHHHHEECCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCC
GVLTEAIRRRPYQVVLFDEVEKAHSDVFNVLLQVLDDGRLTDGQGRVVDFTNTLIILTSN
CHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEECCEEEEEECC
LGSQYLANLEEGQDVQSVEPQVMDVVRAHFRPEFLNRLDEIILFHRLGHEHMAPIVDIQV
CCHHHHHHCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHCCCHHEEHH
GRVANLLKDRKIVLDLTDAAKRWLGRVGYDPVYGARPLKRAVQRYLQDPLAEKLLGGEVP
HHHHHHHHCCEEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCC
DGSTVRIDEGDGALSFVIA
CCCEEEEECCCCCEEEEEC
>Mature Secondary Structure
MNLEKFTDRAKGFLQAAQTVAIRMNHQRITPDHILKALLEDSEGMASGLIQRAGGNAALA
CCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH
QTEVDKALAKIPAVSGSGAQATPGLDNDAVRVLDSAEQIAAKSNDSFVTVERMLVALTLA
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
TTTSAGQALKAANVTAQALEAAITQLRGGRTADSASAENAYDAMKKYARDLTEAAREGKL
HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
DPVIGRDEEIRRTVQILARRTKNNPALIGEPGVGKTAIAEGLALRIANGDVPDSLKDRRL
CCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHCCCEEEEECCCCCCCHHCCEE
MALDMGSLIAGAKYRGEFEERLKAVLDEVKGAEGEIILFIDEMHTLIGAGKSEGAMDAGN
HEECHHHHHHCCHHCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCH
LLKPALARGELHCIGATTLDEYQKYVEKDPALQRRFQPVFVGEPTVEDTISILRGIKDKY
HHHHHHHCCCEEEEECCCHHHHHHHHHCCHHHHHHCCCEECCCCCHHHHHHHHHHHHHHH
ELHHGVRIADNAIVAAATLSNRYISDRFLPDKAIDLMDEAASRIRMEVESKPEEIEKLDR
HHHCCCEEECCCEEEEHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RIIQMKIEEMALAKETDQASKDRLATLREELANQEQQSAELTTRWQNERDKIAAEGKVKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHCCHHHH
ALDAARSELEVAQRNGDLAKAGELAYGRIPELERQLAEAQGVSQNAMLREEVTAEDIAAV
HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VSKWTGVPVDRMMEGEREKLLHMEEALGKRVIGQKDAVLAVSKAVRRARAGLQDPNRPLG
HHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
SFLFLGPTGVGKTELTKALAGFLFDDDNAMVRIDMSEFMEKHSVSRLIGAPPGYVGYDEG
CEEEECCCCCCHHHHHHHHHHHEECCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCC
GVLTEAIRRRPYQVVLFDEVEKAHSDVFNVLLQVLDDGRLTDGQGRVVDFTNTLIILTSN
CHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEECCEEEEEECC
LGSQYLANLEEGQDVQSVEPQVMDVVRAHFRPEFLNRLDEIILFHRLGHEHMAPIVDIQV
CCHHHHHHCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHCCCHHEEHH
GRVANLLKDRKIVLDLTDAAKRWLGRVGYDPVYGARPLKRAVQRYLQDPLAEKLLGGEVP
HHHHHHHHCCEEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCC
DGSTVRIDEGDGALSFVIA
CCCEEEEECCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA