| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is ucpA [H]
Identifier: 87200805
GI number: 87200805
Start: 3014182
End: 3014955
Strand: Reverse
Name: ucpA [H]
Synonym: Saro_2792
Alternate gene names: 87200805
Gene position: 3014955-3014182 (Counterclockwise)
Preceding gene: 87200806
Following gene: 87200803
Centisome position: 84.65
GC content: 67.7
Gene sequence:
>774_bases ATGGAAACCGCACGCTACTCGCTTGAAGGCCGCATCGCGTTGATTACGGGGGCTTCTTCGGGCCTTGGCGCGCATTTCGC ACGGCTCTTTGCGGCGGCAGGCGCGGCGGTCGTGGTCGGCGCGCGGCGGGTGGAGCGCGTGGCGGCGCTGGCTGACGAGA TCAATGCGGGCGGTGGCAAGGCTCTCGCCGTGGCGCTCGACGTGACCGACGAGGCTTCCATCATCGCGGCGTTCGATGCG GCCGAGGCGGCGCTTGGCGTGCCGGACGTGGTCGTTGCCAATGCCGGGATCGTCGAGGCGGGGCGGTCGGTGGATCTTCC GGCCGAGGCGATGCGGCGGGTGGTCGATACAAACTTCAACGGAGTCTACCTGACCGCGCGCGAAGGGGCGCGGCGGATGA TCGCGGCGGGATCCAGGCAGTCGGAGAAGGGACGGATCATCCTGACCGGATCGATCACCGCGCAGATGACTGCGACCGGC GACGCGGCCTATGCCGCGACCAAGCTGGCGGTCCAGCACCTGGGGCGCCAGTTCGCGCGAGAGTGGGCGCGGCTGGGGAT CAACGTCAACGTGATCCAGCCCGGCTACATCCGTACCGAGATCGACGGCGAGTGGTTCGACACCGAAGGCGGCAAGGCGC AGATCGCCTCGTGGCCGAGGAAGCGGCTGACCGAGGTCTCCGCACTGGACGACATGATGCTGTTCTTCGCCTCTGACGCA TCGCGTCAGGTGACGGGGACGTTCATTTCGGTGGACGACGGGCAGAGCCTGTAA
Upstream 100 bases:
>100_bases TGTCGGGTCTGGCGTTGTAGCTGACCGGCAAGCGCGTGCGCGTTGATGCTTGCGTCGTTTAATGGATCGATTAAACGCTG GGCGACCAAAGGAGAGCTTC
Downstream 100 bases:
>100_bases GCGCGGGCACTATTGCCCCGGCAGTGCGGCCAGCATGTCGGGCGTGAGGACCTGCGGAAGCTGGCGGGGCTCGGCGCCGC CGGCAGGATACCACATATAT
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues METARYSLEGRIALITGASSGLGAHFARLFAAAGAAVVVGARRVERVAALADEINAGGGKALAVALDVTDEASIIAAFDA AEAALGVPDVVVANAGIVEAGRSVDLPAEAMRRVVDTNFNGVYLTAREGARRMIAAGSRQSEKGRIILTGSITAQMTATG DAAYAATKLAVQHLGRQFAREWARLGINVNVIQPGYIRTEIDGEWFDTEGGKAQIASWPRKRLTEVSALDDMMLFFASDA SRQVTGTFISVDDGQSL
Sequences:
>Translated_257_residues METARYSLEGRIALITGASSGLGAHFARLFAAAGAAVVVGARRVERVAALADEINAGGGKALAVALDVTDEASIIAAFDA AEAALGVPDVVVANAGIVEAGRSVDLPAEAMRRVVDTNFNGVYLTAREGARRMIAAGSRQSEKGRIILTGSITAQMTATG DAAYAATKLAVQHLGRQFAREWARLGINVNVIQPGYIRTEIDGEWFDTEGGKAQIASWPRKRLTEVSALDDMMLFFASDA SRQVTGTFISVDDGQSL >Mature_257_residues METARYSLEGRIALITGASSGLGAHFARLFAAAGAAVVVGARRVERVAALADEINAGGGKALAVALDVTDEASIIAAFDA AEAALGVPDVVVANAGIVEAGRSVDLPAEAMRRVVDTNFNGVYLTAREGARRMIAAGSRQSEKGRIILTGSITAQMTATG DAAYAATKLAVQHLGRQFAREWARLGINVNVIQPGYIRTEIDGEWFDTEGGKAQIASWPRKRLTEVSALDDMMLFFASDA SRQVTGTFISVDDGQSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=211, Percent_Identity=31.7535545023697, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=30.3643724696356, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI4503301, Length=257, Percent_Identity=29.1828793774319, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=23.7547892720307, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI7705925, Length=251, Percent_Identity=29.0836653386454, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=28.7937743190661, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI10190704, Length=259, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI109715829, Length=210, Percent_Identity=29.0476190476191, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI7706318, Length=201, Percent_Identity=28.3582089552239, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI4758504, Length=216, Percent_Identity=31.4814814814815, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40807363, Length=205, Percent_Identity=27.3170731707317, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI209862901, Length=214, Percent_Identity=26.6355140186916, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI19923983, Length=214, Percent_Identity=26.6355140186916, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI32483357, Length=257, Percent_Identity=26.0700389105058, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI7657478, Length=254, Percent_Identity=27.5590551181102, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI40254986, Length=127, Percent_Identity=34.6456692913386, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4504505, Length=200, Percent_Identity=33, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=36.2595419847328, Blast_Score=128, Evalue=4e-31, Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=34.1269841269841, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=30, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1789208, Length=255, Percent_Identity=31.7647058823529, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=32.4, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=31.4516129032258, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=28.4, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=28.0769230769231, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI2367365, Length=196, Percent_Identity=34.6938775510204, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=27.7551020408163, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789378, Length=254, Percent_Identity=29.9212598425197, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787820, Length=209, Percent_Identity=30.622009569378, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786701, Length=204, Percent_Identity=27.9411764705882, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=32.3886639676113, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17561272, Length=258, Percent_Identity=33.7209302325581, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=28.8461538461538, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=28.0769230769231, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=28.90625, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI115534694, Length=258, Percent_Identity=27.906976744186, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17564282, Length=199, Percent_Identity=27.1356783919598, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17538182, Length=211, Percent_Identity=33.175355450237, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193203115, Length=197, Percent_Identity=28.9340101522843, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17544670, Length=276, Percent_Identity=24.6376811594203, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=25.1968503937008, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=27.6264591439689, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17560150, Length=269, Percent_Identity=27.5092936802974, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17508895, Length=200, Percent_Identity=27, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71997402, Length=212, Percent_Identity=26.8867924528302, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17561402, Length=263, Percent_Identity=26.2357414448669, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17562908, Length=204, Percent_Identity=29.9019607843137, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17563726, Length=270, Percent_Identity=26.2962962962963, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=26.3565891472868, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=197, Percent_Identity=32.994923857868, Blast_Score=80, Evalue=4e-16, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=32.4, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24641232, Length=203, Percent_Identity=36.9458128078818, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=31.25, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=29.9212598425197, Blast_Score=91, Evalue=5e-19, Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=31.9066147859922, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=32.295719844358, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=33.4975369458128, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI116007234, Length=201, Percent_Identity=34.8258706467662, Blast_Score=88, Evalue=4e-18, Organism=Drosophila melanogaster, GI28571387, Length=205, Percent_Identity=33.6585365853659, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24648944, Length=206, Percent_Identity=31.5533980582524, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24663911, Length=205, Percent_Identity=32.1951219512195, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI116007232, Length=169, Percent_Identity=36.094674556213, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI116007238, Length=191, Percent_Identity=32.9842931937173, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI21358495, Length=202, Percent_Identity=30.6930693069307, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=26.5060240963855, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI18859837, Length=199, Percent_Identity=33.6683417085427, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24641388, Length=205, Percent_Identity=30.7317073170732, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI17737361, Length=201, Percent_Identity=30.3482587064677, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI21357673, Length=255, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24643142, Length=255, Percent_Identity=25.8823529411765, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24648693, Length=211, Percent_Identity=27.9620853080569, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI21355889, Length=211, Percent_Identity=27.9620853080569, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI24584752, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI161076933, Length=196, Percent_Identity=29.0816326530612, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24584748, Length=196, Percent_Identity=29.0816326530612, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI281364494, Length=207, Percent_Identity=28.5024154589372, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26957; Mature: 26957
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METARYSLEGRIALITGASSGLGAHFARLFAAAGAAVVVGARRVERVAALADEINAGGGK CCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHCCCCCE ALAVALDVTDEASIIAAFDAAEAALGVPDVVVANAGIVEAGRSVDLPAEAMRRVVDTNFN EEEEEEECCCCCEEEEEECHHHHHCCCCCEEEECCCCEECCCCCCCCHHHHHHHHCCCCC GVYLTAREGARRMIAAGSRQSEKGRIILTGSITAQMTATGDAAYAATKLAVQHLGRQFAR EEEEEECCCCHHHHHCCCCCCCCCEEEEEECEEEEEEECCCHHHHHHHHHHHHHHHHHHH EWARLGINVNVIQPGYIRTEIDGEWFDTEGGKAQIASWPRKRLTEVSALDDMMLFFASDA HHHHCCCEEEEECCCEEEEECCCCEEECCCCCEEHHCCHHHHHHHHHHHHHHHHHHCCCC SRQVTGTFISVDDGQSL CCEEEEEEEEECCCCCC >Mature Secondary Structure METARYSLEGRIALITGASSGLGAHFARLFAAAGAAVVVGARRVERVAALADEINAGGGK CCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHCCCCCE ALAVALDVTDEASIIAAFDAAEAALGVPDVVVANAGIVEAGRSVDLPAEAMRRVVDTNFN EEEEEEECCCCCEEEEEECHHHHHCCCCCEEEECCCCEECCCCCCCCHHHHHHHHCCCCC GVYLTAREGARRMIAAGSRQSEKGRIILTGSITAQMTATGDAAYAATKLAVQHLGRQFAR EEEEEECCCCHHHHHCCCCCCCCCEEEEEECEEEEEEECCCHHHHHHHHHHHHHHHHHHH EWARLGINVNVIQPGYIRTEIDGEWFDTEGGKAQIASWPRKRLTEVSALDDMMLFFASDA HHHHCCCEEEEECCCEEEEECCCCEEECCCCCEEHHCCHHHHHHHHHHHHHHHHHHCCCC SRQVTGTFISVDDGQSL CCEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]