| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200702
Identifier: 87200702
GI number: 87200702
Start: 2927888
End: 2929408
Strand: Reverse
Name: 87200702
Synonym: Saro_2689
Alternate gene names: NA
Gene position: 2929408-2927888 (Counterclockwise)
Preceding gene: 87200703
Following gene: 87200701
Centisome position: 82.25
GC content: 67.52
Gene sequence:
>1521_bases GTGCGCCGCGCGCTCATCCTCGTTGCGATACTGTGGCCGGCCGCCGTGCTGGCGCAGGACGTCGTCACCTCGTCCGCTCC CGACAGCGTGTCGGTCAGCGTCTATCGCGCGCCGGATCGCGATGGCGACGCCGCGATGGACCTTGACTGGCTCGGCGGAT ACGCGCTCGTCACCGAAAGGCGCACGGTCGAAGTGCCTGCCGGAAAGGCCACGATCCGCTTCGAGGGCGTGGCGGCAGGG CTCTTTCCGGAAAGCGCGATCGTGACAGGCCTTCCGTCCGGCGTTCGCGAGAAGAACATGGATGCCGATCTGCTGTCCCC GCGCAGCCTCTACGCGCGCATGTTCGGTCGGCAGGTGATCCTTCGCCGAACGGTGCCGGGCACGGGGAAGGTCGGGGAAG AGCGTGCCGTGATCCGTTCGGGGGCGGATGGCGCGGCGATCCTGCAGACTGGCGCGGGTTTCGAGGCCGCAAGTTGCGGC GGACTCGACGACGAACTCGTCTATTCCGAAGCGCCCCGCGACCTGTCGACCCGGCCGACCCTGTCCATCGAGACCGAGGC CGCCACGGCGCAGAAAGTCACGCTTTCGCTTTCCTACCTCGCCTGGGGCTTCGACTGGCAGTCGAACTATGTTGTGCGGA TGAATGCCGATGGGCGCACGGCAGACATCTCCGCCTGGGTCACCCTTGCCAGCAGCGATTCGACCAGCTTCGCCGATGCC GATGCGGCAGTGATCGCTGGCCGGATCAACCGCGAGGACGGGACGCGCGGCGTGGAACCGCGCGGAGGAGAGCTTGTCCT GCGTTGCTACCTCACGCCTTACCTTCCCGCGTCGGTCCCCATGCCCGCGCCGCCGCCGGCTCCCGCCATGGCGCCGATGG CGGAGATGGCGGACGTCGTCGTTACCGCCCAGCGTGCGATGCCGATTAACGCGCCGGTTACCGTCCGGCAGGAAGAACTG GGCGATCTCAAGCTCTATCGGGTTCCGGTCCCCGTCACGGTCGCGGCGAACGCGCAGAAGCAGGTCGCGCTTGCCGAACG CAAGGCGGTGAAGATGGAAGTGCTCTATCGCGCCGAGGTGTGGGAAGACAGTATCCGCGAAGTCCGGCAGATGTTGCGTA CCCGCAACCGCCGGGAGGAAGGCCTGGGGCTGCCTCTGCCCGGCGGACCGGTGACGGTGTTCGAACCGCACGGCGATGCC ATGCTTCTGGTCGGCGAAGGCGGTCTGGACGATCGCGCGGAAGGCGAGGACGTGGAGATCCTTCTCGGCAATTCGGGGCA GGTGTCTGCCGTGACGGAAGTTGTCCAGCAGTCGGCGCGGTCGCGCACGATCCGGCTGACGGTAGGCAATGCGCGGCCAG TGCCGGTCCGCTTCGAGGCGCGGATCGCGAGCGCGCCGGCCACGCGCGTGTCCGCGGTTTCGGGCAGGTTGCGGCGCGAA AACGGTCGGTCGGTGTTTCCCTTACTGGTACCCGCCAATGGCCGCGCTATCATCGCGTACAAACTGGTGACGGCGGACTA A
Upstream 100 bases:
>100_bases AACAGCGCTCGGCGGACGAGCGGAGCTGGCAGGTTCCGGTGCCCGCCAATGGCGAGGCGACGCTGACCGTCCAGTTCGAC ACGCGTTACTGACCCCGGCC
Downstream 100 bases:
>100_bases AATGCGGGCGCCTACGTGACATTACGTATCTCTGGCTCTATCCGTTGCGCATGAGCAGGAAGGGCAGTTCCTCCCCCTCG CGTACCCGAACCACCGTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MRRALILVAILWPAAVLAQDVVTSSAPDSVSVSVYRAPDRDGDAAMDLDWLGGYALVTERRTVEVPAGKATIRFEGVAAG LFPESAIVTGLPSGVREKNMDADLLSPRSLYARMFGRQVILRRTVPGTGKVGEERAVIRSGADGAAILQTGAGFEAASCG GLDDELVYSEAPRDLSTRPTLSIETEAATAQKVTLSLSYLAWGFDWQSNYVVRMNADGRTADISAWVTLASSDSTSFADA DAAVIAGRINREDGTRGVEPRGGELVLRCYLTPYLPASVPMPAPPPAPAMAPMAEMADVVVTAQRAMPINAPVTVRQEEL GDLKLYRVPVPVTVAANAQKQVALAERKAVKMEVLYRAEVWEDSIREVRQMLRTRNRREEGLGLPLPGGPVTVFEPHGDA MLLVGEGGLDDRAEGEDVEILLGNSGQVSAVTEVVQQSARSRTIRLTVGNARPVPVRFEARIASAPATRVSAVSGRLRRE NGRSVFPLLVPANGRAIIAYKLVTAD
Sequences:
>Translated_506_residues MRRALILVAILWPAAVLAQDVVTSSAPDSVSVSVYRAPDRDGDAAMDLDWLGGYALVTERRTVEVPAGKATIRFEGVAAG LFPESAIVTGLPSGVREKNMDADLLSPRSLYARMFGRQVILRRTVPGTGKVGEERAVIRSGADGAAILQTGAGFEAASCG GLDDELVYSEAPRDLSTRPTLSIETEAATAQKVTLSLSYLAWGFDWQSNYVVRMNADGRTADISAWVTLASSDSTSFADA DAAVIAGRINREDGTRGVEPRGGELVLRCYLTPYLPASVPMPAPPPAPAMAPMAEMADVVVTAQRAMPINAPVTVRQEEL GDLKLYRVPVPVTVAANAQKQVALAERKAVKMEVLYRAEVWEDSIREVRQMLRTRNRREEGLGLPLPGGPVTVFEPHGDA MLLVGEGGLDDRAEGEDVEILLGNSGQVSAVTEVVQQSARSRTIRLTVGNARPVPVRFEARIASAPATRVSAVSGRLRRE NGRSVFPLLVPANGRAIIAYKLVTAD >Mature_506_residues MRRALILVAILWPAAVLAQDVVTSSAPDSVSVSVYRAPDRDGDAAMDLDWLGGYALVTERRTVEVPAGKATIRFEGVAAG LFPESAIVTGLPSGVREKNMDADLLSPRSLYARMFGRQVILRRTVPGTGKVGEERAVIRSGADGAAILQTGAGFEAASCG GLDDELVYSEAPRDLSTRPTLSIETEAATAQKVTLSLSYLAWGFDWQSNYVVRMNADGRTADISAWVTLASSDSTSFADA DAAVIAGRINREDGTRGVEPRGGELVLRCYLTPYLPASVPMPAPPPAPAMAPMAEMADVVVTAQRAMPINAPVTVRQEEL GDLKLYRVPVPVTVAANAQKQVALAERKAVKMEVLYRAEVWEDSIREVRQMLRTRNRREEGLGLPLPGGPVTVFEPHGDA MLLVGEGGLDDRAEGEDVEILLGNSGQVSAVTEVVQQSARSRTIRLTVGNARPVPVRFEARIASAPATRVSAVSGRLRRE NGRSVFPLLVPANGRAIIAYKLVTAD
Specific function: Unknown
COG id: COG5316
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54105; Mature: 54105
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRALILVAILWPAAVLAQDVVTSSAPDSVSVSVYRAPDRDGDAAMDLDWLGGYALVTER CCCCEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEHHCCCEEEEECC RTVEVPAGKATIRFEGVAAGLFPESAIVTGLPSGVREKNMDADLLSPRSLYARMFGRQVI EEEECCCCCEEEEEECEEECCCCCCHHEECCCCCCHHCCCCCHHCCHHHHHHHHHCCCEE LRRTVPGTGKVGEERAVIRSGADGAAILQTGAGFEAASCGGLDDELVYSEAPRDLSTRPT EEECCCCCCCCCCCCHHEECCCCCEEEEECCCCCCCCCCCCCCCHHEECCCCCCCCCCCC LSIETEAATAQKVTLSLSYLAWGFDWQSNYVVRMNADGRTADISAWVTLASSDSTSFADA EEEECCCCCEEEEEEEEEEEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCC DAAVIAGRINREDGTRGVEPRGGELVLRCYLTPYLPASVPMPAPPPAPAMAPMAEMADVV CCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH VTAQRAMPINAPVTVRQEELGDLKLYRVPVPVTVAANAQKQVALAERKAVKMEVLYRAEV EEHHHCCCCCCCEEEEHHCCCCEEEEEECCCEEEECCCCHHHHHHHHHHEEEEEEEHHHH WEDSIREVRQMLRTRNRREEGLGLPLPGGPVTVFEPHGDAMLLVGEGGLDDRAEGEDVEI HHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCEEE LLGNSGQVSAVTEVVQQSARSRTIRLTVGNARPVPVRFEARIASAPATRVSAVSGRLRRE EECCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC NGRSVFPLLVPANGRAIIAYKLVTAD CCCEEEEEEECCCCCEEEEEEEEECC >Mature Secondary Structure MRRALILVAILWPAAVLAQDVVTSSAPDSVSVSVYRAPDRDGDAAMDLDWLGGYALVTER CCCCEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEHHCCCEEEEECC RTVEVPAGKATIRFEGVAAGLFPESAIVTGLPSGVREKNMDADLLSPRSLYARMFGRQVI EEEECCCCCEEEEEECEEECCCCCCHHEECCCCCCHHCCCCCHHCCHHHHHHHHHCCCEE LRRTVPGTGKVGEERAVIRSGADGAAILQTGAGFEAASCGGLDDELVYSEAPRDLSTRPT EEECCCCCCCCCCCCHHEECCCCCEEEEECCCCCCCCCCCCCCCHHEECCCCCCCCCCCC LSIETEAATAQKVTLSLSYLAWGFDWQSNYVVRMNADGRTADISAWVTLASSDSTSFADA EEEECCCCCEEEEEEEEEEEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCC DAAVIAGRINREDGTRGVEPRGGELVLRCYLTPYLPASVPMPAPPPAPAMAPMAEMADVV CCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH VTAQRAMPINAPVTVRQEELGDLKLYRVPVPVTVAANAQKQVALAERKAVKMEVLYRAEV EEHHHCCCCCCCEEEEHHCCCCEEEEEECCCEEEECCCCHHHHHHHHHHEEEEEEEHHHH WEDSIREVRQMLRTRNRREEGLGLPLPGGPVTVFEPHGDAMLLVGEGGLDDRAEGEDVEI HHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCEEE LLGNSGQVSAVTEVVQQSARSRTIRLTVGNARPVPVRFEARIASAPATRVSAVSGRLRRE EECCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC NGRSVFPLLVPANGRAIIAYKLVTAD CCCEEEEEEECCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA