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The map label for this gene is 87200701

Identifier: 87200701

GI number: 87200701

Start: 2927202

End: 2927837

Strand: Reverse

Name: 87200701

Synonym: Saro_2688

Alternate gene names: NA

Gene position: 2927837-2927202 (Counterclockwise)

Preceding gene: 87200702

Following gene: 87200699

Centisome position: 82.21

GC content: 65.41

Gene sequence:

>636_bases
ATGAGCAGGAAGGGCAGTTCCTCCCCCTCGCGTACCCGAACCACCGTCGCCATCATTGCGTGCATTGTCGCAGCGGTGGT
TGGCGCGGTTCTGCTTGCGTGGGCGCTGCTCCAGGTCGATCTGCCTCCTTCGAGCGTCGACGAGAATGGCCGCTACCGCC
TTGTCGCGACCGATGGTTCGCTGTTCGACCGGGCCAGCCTGCGGGGGCGGCCCTATGTCATATACTTCGGCTACACCAGC
TGTCCCGACCAGTGCCCCCTCATGCTGTCGCGACTGGCGCGGGCGAGGCAGGCGCTCGGACGGCGAGGCCGCGAACTGCG
GATCGTGTTCATCACCGTGGACCCGCAGCGCGACACGCCCGAAAAATTGCGCCGCTTCGTTCAGGAGATCGGCACGCCCA
TCGTGGCGCTTACCGGCAGTCCCGAGGTGATCCAGAAGGTCGCCGACAGCGCGGCGATCTACGTCAGGCGCAATGATTCC
GCGTTGATCGGCTACACGATCGAGCACACGACCAACGCCTTGATTTACAGCCGCGATGATGAGTTTCGCGACACGATCTC
GCCGGCGGACAGCGACGCCGAAGTCCTGGCGAAGCTGCGCGCGGAGCTGGACCGCCCTCAGGAAGCCGGACGGTAG

Upstream 100 bases:

>100_bases
CCGCCAATGGCCGCGCTATCATCGCGTACAAACTGGTGACGGCGGACTAAAATGCGGGCGCCTACGTGACATTACGTATC
TCTGGCTCTATCCGTTGCGC

Downstream 100 bases:

>100_bases
ATCGCGTAGACCTTCTTCACGTGGACGCGGCTTTCCCAAGAGCAATGGGCGCCTTGTTCGACCAGGAAAACGTCGCCTTC
CCCGAAGGTTGCTTCCCGCC

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSRKGSSSPSRTRTTVAIIACIVAAVVGAVLLAWALLQVDLPPSSVDENGRYRLVATDGSLFDRASLRGRPYVIYFGYTS
CPDQCPLMLSRLARARQALGRRGRELRIVFITVDPQRDTPEKLRRFVQEIGTPIVALTGSPEVIQKVADSAAIYVRRNDS
ALIGYTIEHTTNALIYSRDDEFRDTISPADSDAEVLAKLRAELDRPQEAGR

Sequences:

>Translated_211_residues
MSRKGSSSPSRTRTTVAIIACIVAAVVGAVLLAWALLQVDLPPSSVDENGRYRLVATDGSLFDRASLRGRPYVIYFGYTS
CPDQCPLMLSRLARARQALGRRGRELRIVFITVDPQRDTPEKLRRFVQEIGTPIVALTGSPEVIQKVADSAAIYVRRNDS
ALIGYTIEHTTNALIYSRDDEFRDTISPADSDAEVLAKLRAELDRPQEAGR
>Mature_210_residues
SRKGSSSPSRTRTTVAIIACIVAAVVGAVLLAWALLQVDLPPSSVDENGRYRLVATDGSLFDRASLRGRPYVIYFGYTSC
PDQCPLMLSRLARARQALGRRGRELRIVFITVDPQRDTPEKLRRFVQEIGTPIVALTGSPEVIQKVADSAAIYVRRNDSA
LIGYTIEHTTNALIYSRDDEFRDTISPADSDAEVLAKLRAELDRPQEAGR

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=158, Percent_Identity=29.1139240506329, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI281182722, Length=158, Percent_Identity=29.1139240506329, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI281182716, Length=158, Percent_Identity=29.1139240506329, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI153791313, Length=158, Percent_Identity=29.1139240506329, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4759068, Length=161, Percent_Identity=27.3291925465839, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17531419, Length=140, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6319498, Length=162, Percent_Identity=26.5432098765432, Blast_Score=78, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6319511, Length=141, Percent_Identity=27.6595744680851, Blast_Score=72, Evalue=5e-14,
Organism=Drosophila melanogaster, GI19920710, Length=142, Percent_Identity=31.6901408450704, Blast_Score=81, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23278; Mature: 23147

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKGSSSPSRTRTTVAIIACIVAAVVGAVLLAWALLQVDLPPSSVDENGRYRLVATDGS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC
LFDRASLRGRPYVIYFGYTSCPDQCPLMLSRLARARQALGRRGRELRIVFITVDPQRDTP
HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCH
EKLRRFVQEIGTPIVALTGSPEVIQKVADSAAIYVRRNDSALIGYTIEHTTNALIYSRDD
HHHHHHHHHHCCCEEEECCCHHHHHHHHCCEEEEEEECCCEEEEEEEECCCCEEEEECCC
EFRDTISPADSDAEVLAKLRAELDRPQEAGR
HHHHHCCCCCCHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
SRKGSSSPSRTRTTVAIIACIVAAVVGAVLLAWALLQVDLPPSSVDENGRYRLVATDGS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC
LFDRASLRGRPYVIYFGYTSCPDQCPLMLSRLARARQALGRRGRELRIVFITVDPQRDTP
HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCH
EKLRRFVQEIGTPIVALTGSPEVIQKVADSAAIYVRRNDSALIGYTIEHTTNALIYSRDD
HHHHHHHHHHCCCEEEECCCHHHHHHHHCCEEEEEEECCCEEEEEEEECCCCEEEEECCC
EFRDTISPADSDAEVLAKLRAELDRPQEAGR
HHHHHCCCCCCHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]