| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200653
Identifier: 87200653
GI number: 87200653
Start: 2875964
End: 2877673
Strand: Reverse
Name: 87200653
Synonym: Saro_2640
Alternate gene names: NA
Gene position: 2877673-2875964 (Counterclockwise)
Preceding gene: 87200654
Following gene: 87200649
Centisome position: 80.8
GC content: 61.99
Gene sequence:
>1710_bases ATGTCCGACATGGGAAAGCAGCAGTTCAACGCGGACATGGCTGTCGACAATGATCGCCAGATCACTCTGCCGCCCTTGGC TGCTTCCCAGACCGCCGCAAGTGTCGACAATGCGCATCGGCCGATCGGCTTCGTGCGCGAGATCGCAGGCTCCAGTTCGG CCATCGCGCTCGACCTGACAAGGCTCGAGGAATGCTCTGCTGATGTCGATCCCTCGGTTGCCATGTCGGGCAAGGTGGGC AGCCAGATCAAGATCCGGGTCGGCAACTCCTGGCTGCTTGCCAGTGTCAGGACGCAGCGCCAGGACGTTGCCGTCGAAGG CGGCGTGGTTGCACAGATCGACTTCCTTGGCGAAGGCGAGGAGGAACGCCTTACCGGCCGGATCTATGGCTTCCGGCGCG GCATTACGCGCTATCCGGTGCCCGGTGCCCTCGTCTATCCCGCGACGAGCCACGACCTGCGCCAGATTTATGCCAGCGAC GGGCGTACCAACATCTCCATCGGTACCGTTTTCCCGACGCGGGATATCCGCGCAGGGCTCTACGTCGATGCCCTGCTGGG CAAGCACTTTGCGCTCCTGGGATCGACCGGCACCGGCAAGTCCACCGCGGCGGCGCTCATCCTTCACAGGATCTGCGAGA TGGCACCGGCCGGCCATATCGTGATGATCGATCCGCACGGCGAATATTCGAGCGCGTTTCGCCAGACCGGGCAATTGCTG GACGTCTCCAATCTGCAGATGCCCTACTGGCTGATGAACTTCGAGGAGCACTGCGAGGTTTTCGTCACGTCGACCGGCGC GGACCGGCAGATCGATCTCGACATTCTTGCCAAGTGCCTGCTCGCGGCAAGGCAGCGCAACCGGCTGGCGGAGCAGATCG GCAAGATTACAGTCGATTCGCCGATCCCGTATCTTCTTTCGGACCTGCTCAACATCCTCCAGAACGAGATGGGCAAGCTC GACAAGGGGACCAACTCGATCCCCTACATGCGCCTGAAGACCAAGATCGAGGAGATCCGCAGCGATCCGCGATACCAGTT CATGTTCTCGGGCATGCTCGTGGGCGACACGATGGTCGAGTTCATCTCAAAGATTTTCCGAATGCCCGCCAATGGCAAGC CGATCTCGATCATCGACGTGTCGGGCGTCCCATCGGAAATCACGTCTACCGTGGTCGCGGTGCTGAGCCGGTTGGTCTTC GACTATGCCATCTGGGCGCGCGACGAGGAGACCCGGCCTGTGCTGCTGGTCTGCGAAGAGGCGCACCGTTACGTTCCCAA CGAGAGGAACACGCGCGGCTCTTCGGTCGGCGACATCCTTTCCCGGATTGCCAAGGAAGGCCGAAAGTACGGTGTGTCCC TGGGCCTGATCACGCAGCGACCGTCCGACCTTGCCGAAGGCGTCCTGTCGCAGTGCGGCACCATTATCGCGATGCGTCTG AACAACGAGCGGGACCAGGCCTTCGTCAAGGCCGCCATGCCCGAGGGTGCCCGTGGGTTCGTCGACACGATCCCGGCGCT GCGCAACCGTGAATGCATCATCTCCGGTGAAGGCGTGTCCATACCCATGCGCGTCTCGTTCGACGAACTGGAGGCGATGA AGCGCCCGGCGTCGAACGATCCTTCGTTCTATGAATTGTGGAGCAAGGCCGATGCCGACGACCGTGCGGTTGAACGTACG GTCCAGCGCTGGCGGGCACAAAGCCGCTGA
Upstream 100 bases:
>100_bases AGCCCGGACCATTCCGCTGGTGACGGAAAGTTTAGCCCATTTTAACCTGAAACCCCTAACTCTCGACGCCAATTCGAATG ACCGAGGGGTTTGCGGTTTT
Downstream 100 bases:
>100_bases TGTGCATCGCCTATGGCGCGCCAACGATGGCGCGCCATAGGCGGTCGGTCAGAGTGCCGGCGCCATGCGACCTGCCGGGT CGGCGTCGGCGTGGGTTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 569; Mature: 568
Protein sequence:
>569_residues MSDMGKQQFNADMAVDNDRQITLPPLAASQTAASVDNAHRPIGFVREIAGSSSAIALDLTRLEECSADVDPSVAMSGKVG SQIKIRVGNSWLLASVRTQRQDVAVEGGVVAQIDFLGEGEEERLTGRIYGFRRGITRYPVPGALVYPATSHDLRQIYASD GRTNISIGTVFPTRDIRAGLYVDALLGKHFALLGSTGTGKSTAAALILHRICEMAPAGHIVMIDPHGEYSSAFRQTGQLL DVSNLQMPYWLMNFEEHCEVFVTSTGADRQIDLDILAKCLLAARQRNRLAEQIGKITVDSPIPYLLSDLLNILQNEMGKL DKGTNSIPYMRLKTKIEEIRSDPRYQFMFSGMLVGDTMVEFISKIFRMPANGKPISIIDVSGVPSEITSTVVAVLSRLVF DYAIWARDEETRPVLLVCEEAHRYVPNERNTRGSSVGDILSRIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL NNERDQAFVKAAMPEGARGFVDTIPALRNRECIISGEGVSIPMRVSFDELEAMKRPASNDPSFYELWSKADADDRAVERT VQRWRAQSR
Sequences:
>Translated_569_residues MSDMGKQQFNADMAVDNDRQITLPPLAASQTAASVDNAHRPIGFVREIAGSSSAIALDLTRLEECSADVDPSVAMSGKVG SQIKIRVGNSWLLASVRTQRQDVAVEGGVVAQIDFLGEGEEERLTGRIYGFRRGITRYPVPGALVYPATSHDLRQIYASD GRTNISIGTVFPTRDIRAGLYVDALLGKHFALLGSTGTGKSTAAALILHRICEMAPAGHIVMIDPHGEYSSAFRQTGQLL DVSNLQMPYWLMNFEEHCEVFVTSTGADRQIDLDILAKCLLAARQRNRLAEQIGKITVDSPIPYLLSDLLNILQNEMGKL DKGTNSIPYMRLKTKIEEIRSDPRYQFMFSGMLVGDTMVEFISKIFRMPANGKPISIIDVSGVPSEITSTVVAVLSRLVF DYAIWARDEETRPVLLVCEEAHRYVPNERNTRGSSVGDILSRIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL NNERDQAFVKAAMPEGARGFVDTIPALRNRECIISGEGVSIPMRVSFDELEAMKRPASNDPSFYELWSKADADDRAVERT VQRWRAQSR >Mature_568_residues SDMGKQQFNADMAVDNDRQITLPPLAASQTAASVDNAHRPIGFVREIAGSSSAIALDLTRLEECSADVDPSVAMSGKVGS QIKIRVGNSWLLASVRTQRQDVAVEGGVVAQIDFLGEGEEERLTGRIYGFRRGITRYPVPGALVYPATSHDLRQIYASDG RTNISIGTVFPTRDIRAGLYVDALLGKHFALLGSTGTGKSTAAALILHRICEMAPAGHIVMIDPHGEYSSAFRQTGQLLD VSNLQMPYWLMNFEEHCEVFVTSTGADRQIDLDILAKCLLAARQRNRLAEQIGKITVDSPIPYLLSDLLNILQNEMGKLD KGTNSIPYMRLKTKIEEIRSDPRYQFMFSGMLVGDTMVEFISKIFRMPANGKPISIIDVSGVPSEITSTVVAVLSRLVFD YAIWARDEETRPVLLVCEEAHRYVPNERNTRGSSVGDILSRIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRLN NERDQAFVKAAMPEGARGFVDTIPALRNRECIISGEGVSIPMRVSFDELEAMKRPASNDPSFYELWSKADADDRAVERTV QRWRAQSR
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJECL08 and MJ1429 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008571 - InterPro: IPR002789 - InterPro: IPR018538 [H]
Pfam domain/function: PF05872 DUF853; PF01935 DUF87; PF09378 HAS-barrel [H]
EC number: NA
Molecular weight: Translated: 62719; Mature: 62588
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDMGKQQFNADMAVDNDRQITLPPLAASQTAASVDNAHRPIGFVREIAGSSSAIALDLT CCCCCCHHCCCCCEECCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHCCCCCEEEEEHH RLEECSADVDPSVAMSGKVGSQIKIRVGNSWLLASVRTQRQDVAVEGGVVAQIDFLGEGE HHHHCCCCCCCCEEECCCCCCEEEEEECCCEEEEEHHHHHHCEEECCCEEEEEEECCCCC EERLTGRIYGFRRGITRYPVPGALVYPATSHDLRQIYASDGRTNISIGTVFPTRDIRAGL HHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCHH YVDALLGKHFALLGSTGTGKSTAAALILHRICEMAPAGHIVMIDPHGEYSSAFRQTGQLL HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCEE DVSNLQMPYWLMNFEEHCEVFVTSTGADRQIDLDILAKCLLAARQRNRLAEQIGKITVDS ECCCCCCCHHHCCHHCCCEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHCCEEECC PIPYLLSDLLNILQNEMGKLDKGTNSIPYMRLKTKIEEIRSDPRYQFMFSGMLVGDTMVE CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH FISKIFRMPANGKPISIIDVSGVPSEITSTVVAVLSRLVFDYAIWARDEETRPVLLVCEE HHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEH AHRYVPNERNTRGSSVGDILSRIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEE NNERDQAFVKAAMPEGARGFVDTIPALRNRECIISGEGVSIPMRVSFDELEAMKRPASND CCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEECCCCEEEEEECHHHHHHHHCCCCCC PSFYELWSKADADDRAVERTVQRWRAQSR CHHHHHHHCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SDMGKQQFNADMAVDNDRQITLPPLAASQTAASVDNAHRPIGFVREIAGSSSAIALDLT CCCCCHHCCCCCEECCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHCCCCCEEEEEHH RLEECSADVDPSVAMSGKVGSQIKIRVGNSWLLASVRTQRQDVAVEGGVVAQIDFLGEGE HHHHCCCCCCCCEEECCCCCCEEEEEECCCEEEEEHHHHHHCEEECCCEEEEEEECCCCC EERLTGRIYGFRRGITRYPVPGALVYPATSHDLRQIYASDGRTNISIGTVFPTRDIRAGL HHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCHH YVDALLGKHFALLGSTGTGKSTAAALILHRICEMAPAGHIVMIDPHGEYSSAFRQTGQLL HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCEE DVSNLQMPYWLMNFEEHCEVFVTSTGADRQIDLDILAKCLLAARQRNRLAEQIGKITVDS ECCCCCCCHHHCCHHCCCEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHCCEEECC PIPYLLSDLLNILQNEMGKLDKGTNSIPYMRLKTKIEEIRSDPRYQFMFSGMLVGDTMVE CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH FISKIFRMPANGKPISIIDVSGVPSEITSTVVAVLSRLVFDYAIWARDEETRPVLLVCEE HHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEH AHRYVPNERNTRGSSVGDILSRIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEE NNERDQAFVKAAMPEGARGFVDTIPALRNRECIISGEGVSIPMRVSFDELEAMKRPASND CCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEECCCCEEEEEECHHHHHHHHCCCCCC PSFYELWSKADADDRAVERTVQRWRAQSR CHHHHHHHCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]