| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is sseA [H]
Identifier: 87200566
GI number: 87200566
Start: 2755872
End: 2756741
Strand: Direct
Name: sseA [H]
Synonym: Saro_2553
Alternate gene names: 87200566
Gene position: 2755872-2756741 (Clockwise)
Preceding gene: 87200565
Following gene: 87200567
Centisome position: 77.38
GC content: 65.98
Gene sequence:
>870_bases ATGCAGCAGGCAGGAGCACAGGCTAAGATGGATTCGCTGGTTTCGACCCAGTGGCTCGCGAACGAAATGGGCGCGAGCGA CCTCCGTATCGTCGACGCAACGGCGTTCCTGCCGGAGCACGGCCGCAACGCCCTGCTGGAATACGAGGCCTGCCATATCC CCGGCGCGGTGTTCATGGACCTTGCGGACCTTGTCGATTCGGCATCCGCCGTGCCGAACACCCTGCCCCCGGCCGAGAAA TTCGCCAGCAGGATGCAGGCCCTGGGCCTTGGCGACGGCAGCCGCGTCGTGATCTACGACGACAGCCCGATCAAGTCCGC CACCCGCGCCTGGTTCATGCTGACGATGTTCGGGGCGCAGAACGTGGCGCTGCTCGACGGCGGCATCGCCAAGTGGAAAG CGGAAGGCCGCAAGTGCGCCCAGGGCCGCGAAACCTTGCGCGCCCGCCACTTCACCGTGTGGTCCGATCAGAGCCACGTG CGCACCAAGGGCGATGTCCTCGCCAATCTGGACACCAAGGCCGAACAGGTGGTCGACGCGCGGGGCGCGGGCCGCTTTAC CGGCGAGATGGCGGAAACCAATCCGGCCGTGGCGAGCGGGCACATCCCCGGTGCGCGCAACGTGCCCTATTCCAGCCTGT TCAACGCCGACGGCACGTGGAAATCGCCCGACGCGATCCGCGCTATCTTCGAGGCGGCGGGAGTCGATCTTTCGCGTCCA CTGATCTCGTCGTGCGGATCGGGCATGACCGCCAACGTGGTGATCTTCGCCCTGCACCTGATCGGCAAGGACGACGTATC GCTCTATGACGGATCGTGGAGCGAATGGGGGGTCGATCCCGAAACGCCCAAGGCGACTGGACCGGCGTGA
Upstream 100 bases:
>100_bases CGTCCCGGGATGATGCGCGCATCGGCCCTTTTACGGCTCGACGGTCCCGAACAGGCGGTCTAGTCTGCCAGGCACGAACC CGCGCAAAGACGGGTCGCGC
Downstream 100 bases:
>100_bases GAAACTTCCCCGGGGGCTGAAGCCGCAGGGAAGCAGTCGAAACTGGTGGGCATTGCTGCTAACAGCGGGCCGATGAGCAG TTCCGACAACATGAGCGATC
Product: 3-mercaptopyruvate sulfurtransferase
Products: NA
Alternate protein names: MST; Rhodanese-like protein [H]
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MQQAGAQAKMDSLVSTQWLANEMGASDLRIVDATAFLPEHGRNALLEYEACHIPGAVFMDLADLVDSASAVPNTLPPAEK FASRMQALGLGDGSRVVIYDDSPIKSATRAWFMLTMFGAQNVALLDGGIAKWKAEGRKCAQGRETLRARHFTVWSDQSHV RTKGDVLANLDTKAEQVVDARGAGRFTGEMAETNPAVASGHIPGARNVPYSSLFNADGTWKSPDAIRAIFEAAGVDLSRP LISSCGSGMTANVVIFALHLIGKDDVSLYDGSWSEWGVDPETPKATGPA
Sequences:
>Translated_289_residues MQQAGAQAKMDSLVSTQWLANEMGASDLRIVDATAFLPEHGRNALLEYEACHIPGAVFMDLADLVDSASAVPNTLPPAEK FASRMQALGLGDGSRVVIYDDSPIKSATRAWFMLTMFGAQNVALLDGGIAKWKAEGRKCAQGRETLRARHFTVWSDQSHV RTKGDVLANLDTKAEQVVDARGAGRFTGEMAETNPAVASGHIPGARNVPYSSLFNADGTWKSPDAIRAIFEAAGVDLSRP LISSCGSGMTANVVIFALHLIGKDDVSLYDGSWSEWGVDPETPKATGPA >Mature_289_residues MQQAGAQAKMDSLVSTQWLANEMGASDLRIVDATAFLPEHGRNALLEYEACHIPGAVFMDLADLVDSASAVPNTLPPAEK FASRMQALGLGDGSRVVIYDDSPIKSATRAWFMLTMFGAQNVALLDGGIAKWKAEGRKCAQGRETLRARHFTVWSDQSHV RTKGDVLANLDTKAEQVVDARGAGRFTGEMAETNPAVASGHIPGARNVPYSSLFNADGTWKSPDAIRAIFEAAGVDLSRP LISSCGSGMTANVVIFALHLIGKDDVSLYDGSWSEWGVDPETPKATGPA
Specific function: Transfers a sulfur ion to cyanide or to other thiol compounds. Also has weak rhodanese activity. Its participation in detoxification of cyanide may be small. May be involved in the enhancement of serine sensitivity [H]
COG id: COG2897
COG function: function code P; Rhodanese-related sulfurtransferase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 rhodanese domains [H]
Homologues:
Organism=Homo sapiens, GI194473668, Length=271, Percent_Identity=40.9594095940959, Blast_Score=216, Evalue=2e-56, Organism=Homo sapiens, GI61835204, Length=271, Percent_Identity=40.9594095940959, Blast_Score=216, Evalue=2e-56, Organism=Homo sapiens, GI194473681, Length=271, Percent_Identity=40.9594095940959, Blast_Score=216, Evalue=2e-56, Organism=Homo sapiens, GI17402865, Length=277, Percent_Identity=39.3501805054152, Blast_Score=191, Evalue=8e-49, Organism=Escherichia coli, GI87082121, Length=272, Percent_Identity=39.7058823529412, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI87081967, Length=302, Percent_Identity=25.1655629139073, Blast_Score=76, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17561888, Length=303, Percent_Identity=28.7128712871287, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI115534702, Length=236, Percent_Identity=29.6610169491525, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71997283, Length=306, Percent_Identity=27.7777777777778, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17559150, Length=269, Percent_Identity=24.907063197026, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17543836, Length=268, Percent_Identity=25, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17543838, Length=268, Percent_Identity=25, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6324825, Length=270, Percent_Identity=28.8888888888889, Blast_Score=111, Evalue=2e-25,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001763 - InterPro: IPR001307 [H]
Pfam domain/function: PF00581 Rhodanese [H]
EC number: =2.8.1.2 [H]
Molecular weight: Translated: 30807; Mature: 30807
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: PS00683 RHODANESE_2 ; PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQAGAQAKMDSLVSTQWLANEMGASDLRIVDATAFLPEHGRNALLEYEACHIPGAVFMD CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCEEEEHHHCCCHHHHHH LADLVDSASAVPNTLPPAEKFASRMQALGLGDGSRVVIYDDSPIKSATRAWFMLTMFGAQ HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC NVALLDGGIAKWKAEGRKCAQGRETLRARHFTVWSDQSHVRTKGDVLANLDTKAEQVVDA CEEEECCCHHHHHHCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEECCCHHHHHHHHH RGAGRFTGEMAETNPAVASGHIPGARNVPYSSLFNADGTWKSPDAIRAIFEAAGVDLSRP CCCCCCCCCHHHCCCCEECCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHH LISSCGSGMTANVVIFALHLIGKDDVSLYDGSWSEWGVDPETPKATGPA HHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCCCCCCCCC >Mature Secondary Structure MQQAGAQAKMDSLVSTQWLANEMGASDLRIVDATAFLPEHGRNALLEYEACHIPGAVFMD CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCEEEEHHHCCCHHHHHH LADLVDSASAVPNTLPPAEKFASRMQALGLGDGSRVVIYDDSPIKSATRAWFMLTMFGAQ HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC NVALLDGGIAKWKAEGRKCAQGRETLRARHFTVWSDQSHVRTKGDVLANLDTKAEQVVDA CEEEECCCHHHHHHCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEECCCHHHHHHHHH RGAGRFTGEMAETNPAVASGHIPGARNVPYSSLFNADGTWKSPDAIRAIFEAAGVDLSRP CCCCCCCCCHHHCCCCEECCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHH LISSCGSGMTANVVIFALHLIGKDDVSLYDGSWSEWGVDPETPKATGPA HHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]