| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200565
Identifier: 87200565
GI number: 87200565
Start: 2754579
End: 2755766
Strand: Direct
Name: 87200565
Synonym: Saro_2552
Alternate gene names: NA
Gene position: 2754579-2755766 (Clockwise)
Preceding gene: 87200563
Following gene: 87200566
Centisome position: 77.34
GC content: 72.31
Gene sequence:
>1188_bases ATGAGGACCACGGGGCACTTTCCGACAACCCTTGCCGCGCTTGCGCTGACCGCCGCCGCCGTCACCGCGACCGGCGCGCG CGCACAGAATGCCGGCTCATACCAGTTGCCGCCTGCGCCCACGCCCTCGGCCACGGCGCAAGGCCCGGTCGTCCCCGGCT CGCCGCCACCGCGCGTCGCCACGACCGACGCGCCCACCGTAGAGACTCCCCCTCCCCAGGCTGCCCCGCCTCCGGTGATC GCCGCGCCCACTCCGACCTCGGCCCCGACTGCCCGGCCTTCCCCCCGACCCCGGCCCGCCATGACGGCGCAGCCAATGCC GGCGCCGACAACCTCGACAACCGCGCTTCCCGCGCCGAGTCCGAGCCCGACCGGCGCGGCGGCTCTTCCGCCGCCACTGA CCCAGCCGACCCTCGACACCCCCGCCCTTGCGCCCCCGCCACTTGCCCCCGCCCCCGAGCCAGCGAGCAATCCGCTGCCG TGGATCGCGGGCTTCCTGCTGGCCCTCGGGGCGGTCGTTGGCTGGTTGCTGCTGCGCCGCAGGCAGACGCTGGCCGAGGC GGAGCCGGAGTTCGAACGGCCCGTCGTGGCCGGCAAGACCGCTTCGCCAGCCCCAGCCCCAGCCGAGCCCGAGCCCAAAT CCGCTCCAGCGCCTCGACCGGCCCCGACAGCGCCCTCGGTGTCACCAGCGGCGGCGATGCAGCCCCTCGACATGCACCTT CACGCGGCGCGGATGAGCGCGAGCCTCGTCAATGCGACGCTGGCCTATCGCCTGCTGATTACCGCCGACGAGGACGTGAC CGACCTTGTCGTGCGTGGCGACATGGTTTCGGCCCACGCATCGCGCCCCGCGGAGGAACAGCTTGGCCTGTCGGATGCGC CAACACTGCATCGGGTGGACCGGATGAGCGTCGGAGAAACGCTGGAACTTTCAGGAGAAATCCGCCTTCCGCTGGCCGCG ATCACCCCGATCCGGCATGGCGACGCGGCGCTGTTCGTACCGTTGGTGCGGATCGAGGCCCTCGGGCTTTCGGCAAGCGG AAAGCCGGTGAAACTGAGAGCCGCTTTCGTCATCGGGCTGGACGAGGGACAGGCGGGGACGCGGCTCCAGCCCTTCCGCC TCGACCTTGGCCCGAGGGTGTACCAGCAGGTCGGACAGCGCGCCCTGCCCGTCCCGGCGTTTGCCTGA
Upstream 100 bases:
>100_bases GCGCGCCCAATGCACCGGTCGCAGCCGCAGGGCAAGTGAGCCGATCATGCCCATCGGTTCATCGACGATTAAACCACCCG CGCCTTGTCCGGGTTCCATG
Downstream 100 bases:
>100_bases AGGCGCGTCCCGGGATGATGCGCGCATCGGCCCTTTTACGGCTCGACGGTCCCGAACAGGCGGTCTAGTCTGCCAGGCAC GAACCCGCGCAAAGACGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 395; Mature: 395
Protein sequence:
>395_residues MRTTGHFPTTLAALALTAAAVTATGARAQNAGSYQLPPAPTPSATAQGPVVPGSPPPRVATTDAPTVETPPPQAAPPPVI AAPTPTSAPTARPSPRPRPAMTAQPMPAPTTSTTALPAPSPSPTGAAALPPPLTQPTLDTPALAPPPLAPAPEPASNPLP WIAGFLLALGAVVGWLLLRRRQTLAEAEPEFERPVVAGKTASPAPAPAEPEPKSAPAPRPAPTAPSVSPAAAMQPLDMHL HAARMSASLVNATLAYRLLITADEDVTDLVVRGDMVSAHASRPAEEQLGLSDAPTLHRVDRMSVGETLELSGEIRLPLAA ITPIRHGDAALFVPLVRIEALGLSASGKPVKLRAAFVIGLDEGQAGTRLQPFRLDLGPRVYQQVGQRALPVPAFA
Sequences:
>Translated_395_residues MRTTGHFPTTLAALALTAAAVTATGARAQNAGSYQLPPAPTPSATAQGPVVPGSPPPRVATTDAPTVETPPPQAAPPPVI AAPTPTSAPTARPSPRPRPAMTAQPMPAPTTSTTALPAPSPSPTGAAALPPPLTQPTLDTPALAPPPLAPAPEPASNPLP WIAGFLLALGAVVGWLLLRRRQTLAEAEPEFERPVVAGKTASPAPAPAEPEPKSAPAPRPAPTAPSVSPAAAMQPLDMHL HAARMSASLVNATLAYRLLITADEDVTDLVVRGDMVSAHASRPAEEQLGLSDAPTLHRVDRMSVGETLELSGEIRLPLAA ITPIRHGDAALFVPLVRIEALGLSASGKPVKLRAAFVIGLDEGQAGTRLQPFRLDLGPRVYQQVGQRALPVPAFA >Mature_395_residues MRTTGHFPTTLAALALTAAAVTATGARAQNAGSYQLPPAPTPSATAQGPVVPGSPPPRVATTDAPTVETPPPQAAPPPVI AAPTPTSAPTARPSPRPRPAMTAQPMPAPTTSTTALPAPSPSPTGAAALPPPLTQPTLDTPALAPPPLAPAPEPASNPLP WIAGFLLALGAVVGWLLLRRRQTLAEAEPEFERPVVAGKTASPAPAPAEPEPKSAPAPRPAPTAPSVSPAAAMQPLDMHL HAARMSASLVNATLAYRLLITADEDVTDLVVRGDMVSAHASRPAEEQLGLSDAPTLHRVDRMSVGETLELSGEIRLPLAA ITPIRHGDAALFVPLVRIEALGLSASGKPVKLRAAFVIGLDEGQAGTRLQPFRLDLGPRVYQQVGQRALPVPAFA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40422; Mature: 40422
Theoretical pI: Translated: 9.01; Mature: 9.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTTGHFPTTLAALALTAAAVTATGARAQNAGSYQLPPAPTPSATAQGPVVPGSPPPRVA CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE TTDAPTVETPPPQAAPPPVIAAPTPTSAPTARPSPRPRPAMTAQPMPAPTTSTTALPAPS CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PSPTGAAALPPPLTQPTLDTPALAPPPLAPAPEPASNPLPWIAGFLLALGAVVGWLLLRR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH RQTLAEAEPEFERPVVAGKTASPAPAPAEPEPKSAPAPRPAPTAPSVSPAAAMQPLDMHL HHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHH HAARMSASLVNATLAYRLLITADEDVTDLVVRGDMVSAHASRPAEEQLGLSDAPTLHRVD HHHHHHHHHHHHEEEEEEEEECCCCCEEHEEECCHHHHHCCCCHHHHCCCCCCCHHHHHH RMSVGETLELSGEIRLPLAAITPIRHGDAALFVPLVRIEALGLSASGKPVKLRAAFVIGL HHCCCCEEEECCCEECCHHHCCCCCCCCCEEEHHHHHHEEECCCCCCCCEEEEEEEEEEE DEGQAGTRLQPFRLDLGPRVYQQVGQRALPVPAFA CCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MRTTGHFPTTLAALALTAAAVTATGARAQNAGSYQLPPAPTPSATAQGPVVPGSPPPRVA CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE TTDAPTVETPPPQAAPPPVIAAPTPTSAPTARPSPRPRPAMTAQPMPAPTTSTTALPAPS CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PSPTGAAALPPPLTQPTLDTPALAPPPLAPAPEPASNPLPWIAGFLLALGAVVGWLLLRR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH RQTLAEAEPEFERPVVAGKTASPAPAPAEPEPKSAPAPRPAPTAPSVSPAAAMQPLDMHL HHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHH HAARMSASLVNATLAYRLLITADEDVTDLVVRGDMVSAHASRPAEEQLGLSDAPTLHRVD HHHHHHHHHHHHEEEEEEEEECCCCCEEHEEECCHHHHHCCCCHHHHCCCCCCCHHHHHH RMSVGETLELSGEIRLPLAAITPIRHGDAALFVPLVRIEALGLSASGKPVKLRAAFVIGL HHCCCCEEEECCCEECCHHHCCCCCCCCCEEEHHHHHHEEECCCCCCCCEEEEEEEEEEE DEGQAGTRLQPFRLDLGPRVYQQVGQRALPVPAFA CCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA