| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is pspC [C]
Identifier: 87200508
GI number: 87200508
Start: 2696022
End: 2696246
Strand: Direct
Name: pspC [C]
Synonym: Saro_2495
Alternate gene names: 87200508
Gene position: 2696022-2696246 (Clockwise)
Preceding gene: 87200494
Following gene: 87200513
Centisome position: 75.7
GC content: 65.33
Gene sequence:
>225_bases ATGAGCCAGCTTCGCTTCGACGACTCGGCTCCGCGCCCGATCGAAACCTCGCGCGGCTTCCGCCTCGACAAGGCGGGCGG CAAGGTGATGGGCGTCTGTGCCGGTATCGCCAACTACTTCAACGTCGACGTGACGCTGGTCCGCGTGGCCTTCGCACTCG GCACCCTGCTCGGCTTTGGATCCGCCGTGCTGGTCTACCTGCTGATCGGCCTAATCGCCGACTGA
Upstream 100 bases:
>100_bases CAGCCGCCAGCGCCTTCGCCCTGAGCCTCGCGCTGATCGCAGGAACCGTCAGCACCCCGGCCCACCAGGCCGCCACCGTC GCCCTGCAGGAGATGATCTG
Downstream 100 bases:
>100_bases CACCTGAGGGCCCGTCCAGCCCCAGCGCCCCGCCTCTCCCGCCCCCGGAGAGGCGGGGCTTCTCCATTTCAGACCTGCGG CGCCTTGGCGAAGGGCGAGA
Product: phage shock protein C, PspC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 74; Mature: 73
Protein sequence:
>74_residues MSQLRFDDSAPRPIETSRGFRLDKAGGKVMGVCAGIANYFNVDVTLVRVAFALGTLLGFGSAVLVYLLIGLIAD
Sequences:
>Translated_74_residues MSQLRFDDSAPRPIETSRGFRLDKAGGKVMGVCAGIANYFNVDVTLVRVAFALGTLLGFGSAVLVYLLIGLIAD >Mature_73_residues SQLRFDDSAPRPIETSRGFRLDKAGGKVMGVCAGIANYFNVDVTLVRVAFALGTLLGFGSAVLVYLLIGLIAD
Specific function: The Phage Shock Protein (Psp) Operon (Pspabce) May Play A Significant Role In The Competition For Survival Under Nutrient- Or Energy-Limited Conditions. Pspc Is Involved In Transcription Regulation. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7849; Mature: 7718
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQLRFDDSAPRPIETSRGFRLDKAGGKVMGVCAGIANYFNVDVTLVRVAFALGTLLGFG CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAVLVYLLIGLIAD HHHHHHHHHHHHCC >Mature Secondary Structure SQLRFDDSAPRPIETSRGFRLDKAGGKVMGVCAGIANYFNVDVTLVRVAFALGTLLGFG CCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAVLVYLLIGLIAD HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA