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The map label for this gene is cph2 [H]

Identifier: 87200494

GI number: 87200494

Start: 2682188

End: 2683312

Strand: Direct

Name: cph2 [H]

Synonym: Saro_2481

Alternate gene names: 87200494

Gene position: 2682188-2683312 (Clockwise)

Preceding gene: 87200493

Following gene: 87200508

Centisome position: 75.31

GC content: 64.36

Gene sequence:

>1125_bases
TTGCTACAATGGCTGGGACTCAAACCCGAAGAGACCGGTGACGATCCCACCGACGGCCCGGAAGCGCACCAGCGGGAAAT
TACGCCGCGCGAGATCTGGCTACCGGCAAAGCGGCGGTTGCTCGGGAACGTCGCGGACTTCCTGATCGACCACGATCTTG
AAGTCATGCCGTGGACCCTCGAAGTCGCCTACGATTTCGTGACCGGTGCCAATCCGCGCATCGCCCAGCTCATTCTCGAA
CGCTCCGATTCCGGACAGGCGGTCACGCTGCAATGGCTCGAGGCGATCTACCGCGAGTCCGAGGGCGATGGCACCACCGA
TGCCCTGGCCGTCCTCATGGCGCGCCTGGAGGAGAGCCTGGAACACTTCTCCAGCACCACGACCAGCGCGCGAACGGCGA
CCAGCGAATACGGGGCGGCGCTGCAACAGCACGTCGATGATCTCGAACAGGTAAGCAAGGCTGGCGTCGTCATAACCGAG
CTGGCCGCTCTCGCCCGCGCGATGATGCACCGCACGCGCGAAATCGAAACCGACCTCAACGAGTCCGAATGCCGTGCCAG
AGCCTTGCAGAAGAGCCTCGACGAGGCGCGCCGCAACGCCGAGGAAGACCATCTCACCGGTCTCCCCAACCGACGGGCGT
TCGAAGCCCTCTTCGAACGGGAATATCAGGAAGCACGCAAGGCCGGCGAGCCGCTGTGCGTGGCATTCTGCGACATCGAC
CATTTCAAGCGCATCAATGACGCGCACGGCCATGCCGCCGGTGACCGCGTGCTGAAGCTCGTGGCAGAGACGCTCAATCG
CATTTCCGATGCACGCTGCCACGTCGCGCGTCACGGCGGCGAGGAATTCGCCGTCCTCTTCCGGTCGCTGACCCCGGACG
ATGCCTGGGAACGCCTTGACCGGGCGCGACAGGAGATCGCCGACCGCCGTCTCGTAAACCGTGCCACCGACCTCCCGTTC
GGCCGCGTCACGTTCTCTGGCGGCATTGCCGATGTCTTTGCCTATGATAGCCGCACCAATGCCCTGCGCGCTGCGGACGA
CGCGCTTTATGCGGCCAAGCAATCGGGCAGGAACCAGATACACCTTGCAGGCAAGGCGCCGCCTCCCATCCAGGATGCGG
CCTGA

Upstream 100 bases:

>100_bases
CGCAATCTTCGCGGCGCTGCATGGTTAATGACCGTGCGGCGCCGCCGTCCTTTGGCGCATGGCACATGACGAACATCCCG
CGCGCGGGTCGCGCAACCGT

Downstream 100 bases:

>100_bases
CAGCCCACGGTCGTCCCGCAGGACGCGGGACCGCAATGCCGACGACAAGGACAGCAGAAGGCAAAGAAAAAGGCCCCACC
TTGCGGTGGAGCCTCGTTCT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MLQWLGLKPEETGDDPTDGPEAHQREITPREIWLPAKRRLLGNVADFLIDHDLEVMPWTLEVAYDFVTGANPRIAQLILE
RSDSGQAVTLQWLEAIYRESEGDGTTDALAVLMARLEESLEHFSSTTTSARTATSEYGAALQQHVDDLEQVSKAGVVITE
LAALARAMMHRTREIETDLNESECRARALQKSLDEARRNAEEDHLTGLPNRRAFEALFEREYQEARKAGEPLCVAFCDID
HFKRINDAHGHAAGDRVLKLVAETLNRISDARCHVARHGGEEFAVLFRSLTPDDAWERLDRARQEIADRRLVNRATDLPF
GRVTFSGGIADVFAYDSRTNALRAADDALYAAKQSGRNQIHLAGKAPPPIQDAA

Sequences:

>Translated_374_residues
MLQWLGLKPEETGDDPTDGPEAHQREITPREIWLPAKRRLLGNVADFLIDHDLEVMPWTLEVAYDFVTGANPRIAQLILE
RSDSGQAVTLQWLEAIYRESEGDGTTDALAVLMARLEESLEHFSSTTTSARTATSEYGAALQQHVDDLEQVSKAGVVITE
LAALARAMMHRTREIETDLNESECRARALQKSLDEARRNAEEDHLTGLPNRRAFEALFEREYQEARKAGEPLCVAFCDID
HFKRINDAHGHAAGDRVLKLVAETLNRISDARCHVARHGGEEFAVLFRSLTPDDAWERLDRARQEIADRRLVNRATDLPF
GRVTFSGGIADVFAYDSRTNALRAADDALYAAKQSGRNQIHLAGKAPPPIQDAA
>Mature_374_residues
MLQWLGLKPEETGDDPTDGPEAHQREITPREIWLPAKRRLLGNVADFLIDHDLEVMPWTLEVAYDFVTGANPRIAQLILE
RSDSGQAVTLQWLEAIYRESEGDGTTDALAVLMARLEESLEHFSSTTTSARTATSEYGAALQQHVDDLEQVSKAGVVITE
LAALARAMMHRTREIETDLNESECRARALQKSLDEARRNAEEDHLTGLPNRRAFEALFEREYQEARKAGEPLCVAFCDID
HFKRINDAHGHAAGDRVLKLVAETLNRISDARCHVARHGGEEFAVLFRSLTPDDAWERLDRARQEIADRRLVNRATDLPF
GRVTFSGGIADVFAYDSRTNALRAADDALYAAKQSGRNQIHLAGKAPPPIQDAA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=172, Percent_Identity=31.3953488372093, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1787262, Length=198, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=34.8837209302326, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1786584, Length=165, Percent_Identity=31.5151515151515, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=177, Percent_Identity=30.5084745762712, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=31.4465408805031, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=30.1282051282051, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=35.8974358974359, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082007, Length=187, Percent_Identity=35.2941176470588, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=30.8988764044944, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788956, Length=181, Percent_Identity=33.7016574585635, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 41729; Mature: 41729

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQWLGLKPEETGDDPTDGPEAHQREITPREIWLPAKRRLLGNVADFLIDHDLEVMPWTL
CCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHH
EVAYDFVTGANPRIAQLILERSDSGQAVTLQWLEAIYRESEGDGTTDALAVLMARLEESL
HHHHHHHCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
EHFSSTTTSARTATSEYGAALQQHVDDLEQVSKAGVVITELAALARAMMHRTREIETDLN
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
ESECRARALQKSLDEARRNAEEDHLTGLPNRRAFEALFEREYQEARKAGEPLCVAFCDID
HHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
HFKRINDAHGHAAGDRVLKLVAETLNRISDARCHVARHGGEEFAVLFRSLTPDDAWERLD
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHH
RARQEIADRRLVNRATDLPFGRVTFSGGIADVFAYDSRTNALRAADDALYAAKQSGRNQI
HHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEE
HLAGKAPPPIQDAA
EECCCCCCCCCCCC
>Mature Secondary Structure
MLQWLGLKPEETGDDPTDGPEAHQREITPREIWLPAKRRLLGNVADFLIDHDLEVMPWTL
CCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHH
EVAYDFVTGANPRIAQLILERSDSGQAVTLQWLEAIYRESEGDGTTDALAVLMARLEESL
HHHHHHHCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
EHFSSTTTSARTATSEYGAALQQHVDDLEQVSKAGVVITELAALARAMMHRTREIETDLN
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
ESECRARALQKSLDEARRNAEEDHLTGLPNRRAFEALFEREYQEARKAGEPLCVAFCDID
HHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
HFKRINDAHGHAAGDRVLKLVAETLNRISDARCHVARHGGEEFAVLFRSLTPDDAWERLD
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHH
RARQEIADRRLVNRATDLPFGRVTFSGGIADVFAYDSRTNALRAADDALYAAKQSGRNQI
HHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEE
HLAGKAPPPIQDAA
EECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]