| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200473
Identifier: 87200473
GI number: 87200473
Start: 2653733
End: 2656573
Strand: Reverse
Name: 87200473
Synonym: Saro_2460
Alternate gene names: NA
Gene position: 2656573-2653733 (Counterclockwise)
Preceding gene: 87200474
Following gene: 87200472
Centisome position: 74.59
GC content: 64.38
Gene sequence:
>2841_bases ATGGGGCTGATCGTCTGGGCAGCAGTGGCCGGTGCGCTGCTCTGCTGGGTTTACGCCGACTTCGAGTTCGCGGGATTCAT CGTTGGCGGGTTGTTCGGCGGTCTCATGGGCCTATGGCTTCGATCCGCTTTGCGCGATGAAATTGCCGCAGCGGTGAACA ATGTTCTCGATGCCCGGCTAGAGGCGGCGAGGCGGCTGCGCGCCGAACCGGCTTCGACGCCTGCACCGGATGCAACGGAA CCCGCGCCGCCGCCATCTCCCCCTACTTCGCCGCCGGTGATGCCGCAATCACCGCAAACCCCGGTCTCGCGCCAATCCGT GCCGGCGTCCGTACCCGCCCAGTCGCGTGAACCTGCAGTTGACCGGGAAGTGGCGACTGCGTCGCTTGCCGCAGGTGCGC CGACACTTCCCGAGGTATTGTTTGCAAGCGCCCGCGACTGGTTGCTTGGAGGAAATACCATCGTCCGTGTCGGCCTTGTC GTGCTGTTTCTCGGGCTCGTCTTCCTCGCAAGGTTTGCCGCGATGGCGGGGCTTTATCCGATAGAGGCGCGGCTCGCGAC TGTCGCGGCGGTCGGGATCGCGCTGCTAGGCGTGGGCCTTGCCAAGCGGACGGTCAGGCGCGATTTCTCGCTCTCGATGC AGGGGGCTGGCCTTGGCGTCCTCTACCTGGTCGTCTTTGCCGGGGCCCGCGCCTACGATGTGCTTCCTGTCGGCGCGGCG TTCGCCTTCATGATTCTCTTTGCCGCGCTGGGTTGCGCGCTTGCCGTCTTGCAGGATGCGCTGGCAATGGCGCTTGCCTC GTTCCTCGGAGGTTTCGCCGTTCCCCTGCTTCTGGGCGGAAATGCCGAAACGCCGCTCGCCCTGTTCGGCTACATGACTA TCCTCAATCTCGCGATCCTGTTCATCGCCTGGAAGAAGAGCTGGCGTTCGCTGAACCTACTGGGTTTCATTTCGACCTTC GCGCTTGCGACGGTGTGGGGCCTCGCGTCCTATGCAGACAGGCATTACCTGCTTTGCCAGGTATTCCTGATTATCTCCAT CGCCATCTACCTCGCGGCAGCCGTGCTTTATGCGCACAATACGCCGGGACGGCTTGGCAACTACGCGGATTCGACGCTGT TGTTCGGAACCGCGCTTGCAGGCTTCGGTCTGCAGATCGCGCTTGTCCATGCCCGCCCGTTCGCATCGGCATGGTCTGCA CTGGCGTTCGGCATCGGTTACGTTGCCTTGGCGGCGCTTCTAATGCGGCGTCGGCGTGCCGAGATGCGACTTTTGAACGA ATGCCTGCTCGCGATCGGGATTGCGTTTGCCACGCTGGCGGTGCCGCTTGCGCTGGACGTCAAATGGACCTCTGCTTCCT GGGCGCTCGAAGGTGCTGGCGCGTTCTGGATCGGCGCGCGACAGGCGCGCTGGATGCCGCGTGCGTTCGGCCTGATATTG CAGGTTGTCGCGGCGGCTCTCGCCCTCGGCTCGCTTGGGCCCAATGTTTCGGCCATTCCGTTTGCCAACAACGGCTTCAT GCTGCCGATGCTCGTCGCGATCCCCGTGCTGTTCTCTGCATGGCTTCTGCGTCACAGGTTGGAGCATAGCGGTTCGCGCT GGGCTACCGGCTATGCGCGGGTCGAGCATGAAATCGGAGCGGTCTGGTTTCTCCTGGGCTTCTTCTTCGTTTGCGTCGCG CTTCTGCGCGAAGTGTCGCGCGCATTGCCGCCCGTTGTTGCGAACGAAATGCCGGTAGGCGCGCTCAGCTCCGGAATTCA GGTTGTGGCGGCCATGGTCGCGCTGCTCGGCGCGATGGTTCTGGCGGACGTCTTTGGCGATCGGAAGCACTGGGCGGTCG CTCGCTGGCCGGGAAGGGCGGCCTTGCCGGTCCTCTGGATCTGCTTCCTGCTGTCGGCCGGACAGGGCAACCACGTTCTC GCGTGGCCGGGCGCCGTTTTCTGGCCGGCGGCGGCGGTAGGGCATGTCTGGCTGTTGCGGCGTCAATCGGTCAACGCGTG GACCTACGCCATGCACGTCGGCGGTGTTCTGCTGTTGACCGCGATCGTGGCCGACAGCATCTGGCTTGCCGTCGATCGAG CTGACCTGTGGGGCACGTCGTGGGCCGGCGTCACATTCCTGGCAAGCGCGACGGCCATGCTGGCGGTGCTGATGCGCTGG GCCGGGCCAGTGGCGTCGTCCGGGACCGACCTTGCCGACAGCTGGCCGCTTGGGGACTATGCTCGTGCCTATTGGCTTCA CGCGGGGATCGTCCTTGTGCACCTCGTGTACTTCGGCGCGCTGGCAACGACCGTGATCGCCGAAGGTATTGCCGATCCGC TGCCATATGTGCCCGTGCTCAACCCGGTCGACCTGTCTGCGCTGCTCGCGCTCGTCGTGCTGCTGCTGTGGGGACGGCTG TTGCTGGGTGCCGTGAAGGACGCGCCGATGCTGGTTGAATTGGCCGCCGACAAGGCCGGCATGGTTGCGTTGGCCGTACT CGCCTTCGTCATCGCCAACACCATTTGGCTGCGTACAGCCCATCATTTTCTCGGGGTCGCCTGGGACAATGCCGCGCTTG CTGAAAGCCAGGTCGTCGAGGCCGGGATCTCGCTGTTGTGGACGCTCATCGCGATGGCGCTCATGTTCCTCGCGCGGAGC CGCCAGCAGCGATTGCCGTGGCTGGCGGGCGCTTCGCTTCTCGGTGCGGTGGTGCTCAAGCTGGTGTTCGTCGATATGTC CGCCGTGGAAGGCCTGGCACGGATCGTCGCCTTCATCGGCGTTGGCGTGCTGATGTTGCTGATCGGCTATTTCGTGCCTC TTCCGCCCCGTCGTGAAGCGGGCAAGGAAGTGGCAGCATGA
Upstream 100 bases:
>100_bases CAACCAATAGTGCCAAGCGATGGGGGTGAAGCCCCGTCATCCATCGCTTCCAATTTCCAGCAAAGCTGGCAAGCTCGACC CGGAGCATGGGAGGGCGTCA
Downstream 100 bases:
>100_bases AGTACCCGCCGCTCCTCGCAATCGCGCTTGCCCTATCTGGCTGTGAGGGAAGGAACACGCCCGTTGACGCGGTGGACGAC TTCGCACTGGGTATTCCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 946; Mature: 945
Protein sequence:
>946_residues MGLIVWAAVAGALLCWVYADFEFAGFIVGGLFGGLMGLWLRSALRDEIAAAVNNVLDARLEAARRLRAEPASTPAPDATE PAPPPSPPTSPPVMPQSPQTPVSRQSVPASVPAQSREPAVDREVATASLAAGAPTLPEVLFASARDWLLGGNTIVRVGLV VLFLGLVFLARFAAMAGLYPIEARLATVAAVGIALLGVGLAKRTVRRDFSLSMQGAGLGVLYLVVFAGARAYDVLPVGAA FAFMILFAALGCALAVLQDALAMALASFLGGFAVPLLLGGNAETPLALFGYMTILNLAILFIAWKKSWRSLNLLGFISTF ALATVWGLASYADRHYLLCQVFLIISIAIYLAAAVLYAHNTPGRLGNYADSTLLFGTALAGFGLQIALVHARPFASAWSA LAFGIGYVALAALLMRRRRAEMRLLNECLLAIGIAFATLAVPLALDVKWTSASWALEGAGAFWIGARQARWMPRAFGLIL QVVAAALALGSLGPNVSAIPFANNGFMLPMLVAIPVLFSAWLLRHRLEHSGSRWATGYARVEHEIGAVWFLLGFFFVCVA LLREVSRALPPVVANEMPVGALSSGIQVVAAMVALLGAMVLADVFGDRKHWAVARWPGRAALPVLWICFLLSAGQGNHVL AWPGAVFWPAAAVGHVWLLRRQSVNAWTYAMHVGGVLLLTAIVADSIWLAVDRADLWGTSWAGVTFLASATAMLAVLMRW AGPVASSGTDLADSWPLGDYARAYWLHAGIVLVHLVYFGALATTVIAEGIADPLPYVPVLNPVDLSALLALVVLLLWGRL LLGAVKDAPMLVELAADKAGMVALAVLAFVIANTIWLRTAHHFLGVAWDNAALAESQVVEAGISLLWTLIAMALMFLARS RQQRLPWLAGASLLGAVVLKLVFVDMSAVEGLARIVAFIGVGVLMLLIGYFVPLPPRREAGKEVAA
Sequences:
>Translated_946_residues MGLIVWAAVAGALLCWVYADFEFAGFIVGGLFGGLMGLWLRSALRDEIAAAVNNVLDARLEAARRLRAEPASTPAPDATE PAPPPSPPTSPPVMPQSPQTPVSRQSVPASVPAQSREPAVDREVATASLAAGAPTLPEVLFASARDWLLGGNTIVRVGLV VLFLGLVFLARFAAMAGLYPIEARLATVAAVGIALLGVGLAKRTVRRDFSLSMQGAGLGVLYLVVFAGARAYDVLPVGAA FAFMILFAALGCALAVLQDALAMALASFLGGFAVPLLLGGNAETPLALFGYMTILNLAILFIAWKKSWRSLNLLGFISTF ALATVWGLASYADRHYLLCQVFLIISIAIYLAAAVLYAHNTPGRLGNYADSTLLFGTALAGFGLQIALVHARPFASAWSA LAFGIGYVALAALLMRRRRAEMRLLNECLLAIGIAFATLAVPLALDVKWTSASWALEGAGAFWIGARQARWMPRAFGLIL QVVAAALALGSLGPNVSAIPFANNGFMLPMLVAIPVLFSAWLLRHRLEHSGSRWATGYARVEHEIGAVWFLLGFFFVCVA LLREVSRALPPVVANEMPVGALSSGIQVVAAMVALLGAMVLADVFGDRKHWAVARWPGRAALPVLWICFLLSAGQGNHVL AWPGAVFWPAAAVGHVWLLRRQSVNAWTYAMHVGGVLLLTAIVADSIWLAVDRADLWGTSWAGVTFLASATAMLAVLMRW AGPVASSGTDLADSWPLGDYARAYWLHAGIVLVHLVYFGALATTVIAEGIADPLPYVPVLNPVDLSALLALVVLLLWGRL LLGAVKDAPMLVELAADKAGMVALAVLAFVIANTIWLRTAHHFLGVAWDNAALAESQVVEAGISLLWTLIAMALMFLARS RQQRLPWLAGASLLGAVVLKLVFVDMSAVEGLARIVAFIGVGVLMLLIGYFVPLPPRREAGKEVAA >Mature_945_residues GLIVWAAVAGALLCWVYADFEFAGFIVGGLFGGLMGLWLRSALRDEIAAAVNNVLDARLEAARRLRAEPASTPAPDATEP APPPSPPTSPPVMPQSPQTPVSRQSVPASVPAQSREPAVDREVATASLAAGAPTLPEVLFASARDWLLGGNTIVRVGLVV LFLGLVFLARFAAMAGLYPIEARLATVAAVGIALLGVGLAKRTVRRDFSLSMQGAGLGVLYLVVFAGARAYDVLPVGAAF AFMILFAALGCALAVLQDALAMALASFLGGFAVPLLLGGNAETPLALFGYMTILNLAILFIAWKKSWRSLNLLGFISTFA LATVWGLASYADRHYLLCQVFLIISIAIYLAAAVLYAHNTPGRLGNYADSTLLFGTALAGFGLQIALVHARPFASAWSAL AFGIGYVALAALLMRRRRAEMRLLNECLLAIGIAFATLAVPLALDVKWTSASWALEGAGAFWIGARQARWMPRAFGLILQ VVAAALALGSLGPNVSAIPFANNGFMLPMLVAIPVLFSAWLLRHRLEHSGSRWATGYARVEHEIGAVWFLLGFFFVCVAL LREVSRALPPVVANEMPVGALSSGIQVVAAMVALLGAMVLADVFGDRKHWAVARWPGRAALPVLWICFLLSAGQGNHVLA WPGAVFWPAAAVGHVWLLRRQSVNAWTYAMHVGGVLLLTAIVADSIWLAVDRADLWGTSWAGVTFLASATAMLAVLMRWA GPVASSGTDLADSWPLGDYARAYWLHAGIVLVHLVYFGALATTVIAEGIADPLPYVPVLNPVDLSALLALVVLLLWGRLL LGAVKDAPMLVELAADKAGMVALAVLAFVIANTIWLRTAHHFLGVAWDNAALAESQVVEAGISLLWTLIAMALMFLARSR QQRLPWLAGASLLGAVVLKLVFVDMSAVEGLARIVAFIGVGVLMLLIGYFVPLPPRREAGKEVAA
Specific function: Unknown
COG id: COG5373
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100265; Mature: 100134
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLIVWAAVAGALLCWVYADFEFAGFIVGGLFGGLMGLWLRSALRDEIAAAVNNVLDARL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAARRLRAEPASTPAPDATEPAPPPSPPTSPPVMPQSPQTPVSRQSVPASVPAQSREPAV HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH DREVATASLAAGAPTLPEVLFASARDWLLGGNTIVRVGLVVLFLGLVFLARFAAMAGLYP HHHHHHHHHHCCCCCHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH IEARLATVAAVGIALLGVGLAKRTVRRDFSLSMQGAGLGVLYLVVFAGARAYDVLPVGAA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCHHHCCHHHHH FAFMILFAALGCALAVLQDALAMALASFLGGFAVPLLLGGNAETPLALFGYMTILNLAIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHH FIAWKKSWRSLNLLGFISTFALATVWGLASYADRHYLLCQVFLIISIAIYLAAAVLYAHN HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TPGRLGNYADSTLLFGTALAGFGLQIALVHARPFASAWSALAFGIGYVALAALLMRRRRA CCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EMRLLNECLLAIGIAFATLAVPLALDVKWTSASWALEGAGAFWIGARQARWMPRAFGLIL HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEECCCCEEEECCHHHCCCHHHHHHHH QVVAAALALGSLGPNVSAIPFANNGFMLPMLVAIPVLFSAWLLRHRLEHSGSRWATGYAR HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH VEHEIGAVWFLLGFFFVCVALLREVSRALPPVVANEMPVGALSSGIQVVAAMVALLGAMV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHH LADVFGDRKHWAVARWPGRAALPVLWICFLLSAGQGNHVLAWPGAVFWPAAAVGHVWLLR HHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHH RQSVNAWTYAMHVGGVLLLTAIVADSIWLAVDRADLWGTSWAGVTFLASATAMLAVLMRW HCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHCCCCHHHHHHHHHHHHHHHHHHHH AGPVASSGTDLADSWPLGDYARAYWLHAGIVLVHLVYFGALATTVIAEGIADPLPYVPVL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC NPVDLSALLALVVLLLWGRLLLGAVKDAPMLVELAADKAGMVALAVLAFVIANTIWLRTA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH HHFLGVAWDNAALAESQVVEAGISLLWTLIAMALMFLARSRQQRLPWLAGASLLGAVVLK HHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LVFVDMSAVEGLARIVAFIGVGVLMLLIGYFVPLPPRREAGKEVAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC >Mature Secondary Structure GLIVWAAVAGALLCWVYADFEFAGFIVGGLFGGLMGLWLRSALRDEIAAAVNNVLDARL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAARRLRAEPASTPAPDATEPAPPPSPPTSPPVMPQSPQTPVSRQSVPASVPAQSREPAV HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH DREVATASLAAGAPTLPEVLFASARDWLLGGNTIVRVGLVVLFLGLVFLARFAAMAGLYP HHHHHHHHHHCCCCCHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH IEARLATVAAVGIALLGVGLAKRTVRRDFSLSMQGAGLGVLYLVVFAGARAYDVLPVGAA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCHHHCCHHHHH FAFMILFAALGCALAVLQDALAMALASFLGGFAVPLLLGGNAETPLALFGYMTILNLAIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHH FIAWKKSWRSLNLLGFISTFALATVWGLASYADRHYLLCQVFLIISIAIYLAAAVLYAHN HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TPGRLGNYADSTLLFGTALAGFGLQIALVHARPFASAWSALAFGIGYVALAALLMRRRRA CCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EMRLLNECLLAIGIAFATLAVPLALDVKWTSASWALEGAGAFWIGARQARWMPRAFGLIL HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEECCCCEEEECCHHHCCCHHHHHHHH QVVAAALALGSLGPNVSAIPFANNGFMLPMLVAIPVLFSAWLLRHRLEHSGSRWATGYAR HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH VEHEIGAVWFLLGFFFVCVALLREVSRALPPVVANEMPVGALSSGIQVVAAMVALLGAMV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHH LADVFGDRKHWAVARWPGRAALPVLWICFLLSAGQGNHVLAWPGAVFWPAAAVGHVWLLR HHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHH RQSVNAWTYAMHVGGVLLLTAIVADSIWLAVDRADLWGTSWAGVTFLASATAMLAVLMRW HCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHCCCCHHHHHHHHHHHHHHHHHHHH AGPVASSGTDLADSWPLGDYARAYWLHAGIVLVHLVYFGALATTVIAEGIADPLPYVPVL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC NPVDLSALLALVVLLLWGRLLLGAVKDAPMLVELAADKAGMVALAVLAFVIANTIWLRTA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH HHFLGVAWDNAALAESQVVEAGISLLWTLIAMALMFLARSRQQRLPWLAGASLLGAVVLK HHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LVFVDMSAVEGLARIVAFIGVGVLMLLIGYFVPLPPRREAGKEVAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA