| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is mrcA [H]
Identifier: 87200330
GI number: 87200330
Start: 2456270
End: 2458804
Strand: Reverse
Name: mrcA [H]
Synonym: Saro_2316
Alternate gene names: 87200330
Gene position: 2458804-2456270 (Counterclockwise)
Preceding gene: 87200331
Following gene: 87200329
Centisome position: 69.04
GC content: 65.96
Gene sequence:
>2535_bases ATGGCCGAAGAGACCCCTGTGCAATCCCGGTTCACCCTCCTGCGCGAGGAAGGCCGTGTCCGCTGGCAAAGCTTCACCCG CTGGTACAGGGCGAAGTGGGGCGAGAGCCGCCGCTTCCGGATAGGCAACTATGTGCTGGGCGCGCTGCTGGCAGGCTGGA TCGTGCTGTGGGTGGTGGTGTCGAGCGCCTTGCCTTCCGCCGACAAGCTGCTGACGTACCAGCCACCGCTGCCGACGATG GTGCGCGGCAACGACGGCGAGATCGTGTCGAGCTATGCGCGCGAGCGGCGCGTGCAGCTTCGTTTCGTCGACTTTCCCGA GCCGCTGATCAATGCGTTCCTTTCGGCCGAGGACAAGACGTTCTGGACCCATGGCGGTATCGACTATCTCGGCTTTGCCG GCGCCGTCGTGGACTATGTGACCAAGTACGGTTCGGGCGAACGTGCGCGCGGCGGTTCGACGATCACGCAGCAGGTCGCC AAGAACATCCTGATCGGCGACGAGTATTCGATCACGCGCAAGCTCAAGGAAATGATCCTTGCACGCCGGATCGAGGGCGT GCTCGACAAGCAGCAGATCCTCGAGCTTTATCTCAACGAGATTCCACTCGGTCGGCAGAGCTTTGGCGTACAGGCTGCGG CGCGGGCCTATTTCGACAAGGACGTGGGCGACCTGCAACTCCACGAGGCGGCGTTCCTGGCGATTCTGCCGAAGGCGCCC GAACGCTATGGCCGCGCAAAGTACGAGCAGCAGGCGATCACCCGGCGCAACTGGGTGCTGGACCAGATGGTCAAGAACGG CTGGGCAACGCCCGAGGCTGCTGCTGCGGCCAAGGCCATGCCGCTCGGCCTGAAGCCGCGCCGCGCCGAAAACTACAACA CCGACGCGGGGTATTTCCTCGAGGAAGTGCGCCGCCAGCTGATCGACAAGTTCGGCGAGAAGGCCGAAGACGGGCCGCAC AGCGTCTACGCGGGCGGACTGTGGGTGCGCACCTCGCTCGACACGCAACTCCAGACGGCTTCGCAGAACGCTCTGCGCGC GGCGCTGCTGCGCTATTCCGGCGGACGGGCGTGGCATGGGCCGATCGCGCGGATCGACGTCGACGGCGACCGCTGGCAGA CCGAGCTGATCACCAGCAACATCTCCATCCGCTACCAGAACTGGCGCGTGGGCGTGCTGCTGTCGCGCAGCGGGTCGAGC GGGAAGGTCGGCTTCTCCGACGGGAAGACCGGAACACTGATCGGCTTGCCGGACAATATCCGGGCGGGCGACATCACGGC GGTTGCGCCTGTCGGCGGCGATACCTGGGCCGTCCGCACCGTGCCCGAGGTTTCAGGCGGCATGGTGGTGGAAGATCCGC AGAACGGTCGCATTCTTGCCATGCAGGGCGGGTTCGACGCGCGCCTCGGCTCGTTCAACCGGGCGACGCAGGCCAATCGC CAGCCGGGATCGACGATCAAGCCGTTCGTCTACGCGACCGGTCTGGACAACGGCATGACGCCTGCCTCGATGGTCGTCGA TGGACCGTTCTGCGTCTACCAGGGCGCGGCGCTGGGCGAGAAGTGCTTCCGCAACTTCAACAACGAGGGTGGTGCGGGCA GCCACACGATGCGCTGGGGCCTTGAGCAGTCGCGCAACCTGATGACAGTGCGCATCGCCAACGACGTTGGCATGGACAAG GTCGTGCGAACCATCAAGGCGGTGGGGATCGGCCAGTATGAGCCCTACCTGTCGATGGCGCTGGGTGCTGGCGACACGAC CGTGCTCAAGATGGTCAATGCCTATGCCGCGCTCGCCAATCAGGGGCGCCAGCACGAGCCGACGTTGATCGACTATGTGC AGGACCGCAACGGCAAGGTGATCTGGCGCGCGGACAACCGTCGTTGCGATGGATGCAGCATGCCGCAATGGGACGGCAAG CAGATGCCGCGCCTGAAGCCGACCGGCAAGCAGGTGATGGACGCGCGCACGGCCTATCAGGTGGTGCACATGCTCGAAGG CGTGGTCGTGCGGGGCACCGCGGTGTCGCTGCGCGACCTCGGCCTGCCGCTGTTCGGCAAGACCGGCACGACTTCGGGCC CGACCAACGTGTGGTTCGTCGGGGGTTCGCCCGACATCATCGCGGGTGTCTATGTCGGTTACGACCAGCCGCGCAGCCTT GGCGGTTACGCCCAGGGCGGGCGCATCGCCGCGCCGGTGTTCAAGCAACTGGTGCAGGAGACGCGCAGCCGCTGGAAGGA CATTCCGTTCGCGGTTCCCGAAGGCGTGCGCATGGTCAAGATCGACCGCGTATCGGGCAAGCGCGTGTTCGGAGGCACCC CCGAGAACGACGTGGCCAAGGCTTCCGTCATCTGGGAGGCGTTCAAGCCCGATACCGAACCGCGTCGCACTGCGCGCGAG GGCGAGGTGAGCGCCAAGCAGGCGGTGATCGACGCGCTGCGCAAGGCGCGCACGGCGAGGGGCATCCCCGAAGGCGGCGC CGAGGAAGCGCCCGTCGAGCAGGACTTCCTCGAGGAACAGGGCGGGATCTACTGA
Upstream 100 bases:
>100_bases CGGAAGGGCAGGCAGGCCCCGGCGTTGCGGCGCCCTGAACAGGATTTGCGACTGCAAGCTCTGGCTTGGCGGGGCGCGAG CGTGCTAGAGGCCCTGCACG
Downstream 100 bases:
>100_bases GGCGTCAGCCGGTGGGGCATCAGTCGGTGAGGCATCAGCCGGGCCTGCCCCGAAAGGCATTGGTGGTCGCCAATTCGATC TGATAGGCTTCGCCGCATGA
Product: peptidoglycan glycosyltransferase
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 844; Mature: 843
Protein sequence:
>844_residues MAEETPVQSRFTLLREEGRVRWQSFTRWYRAKWGESRRFRIGNYVLGALLAGWIVLWVVVSSALPSADKLLTYQPPLPTM VRGNDGEIVSSYARERRVQLRFVDFPEPLINAFLSAEDKTFWTHGGIDYLGFAGAVVDYVTKYGSGERARGGSTITQQVA KNILIGDEYSITRKLKEMILARRIEGVLDKQQILELYLNEIPLGRQSFGVQAAARAYFDKDVGDLQLHEAAFLAILPKAP ERYGRAKYEQQAITRRNWVLDQMVKNGWATPEAAAAAKAMPLGLKPRRAENYNTDAGYFLEEVRRQLIDKFGEKAEDGPH SVYAGGLWVRTSLDTQLQTASQNALRAALLRYSGGRAWHGPIARIDVDGDRWQTELITSNISIRYQNWRVGVLLSRSGSS GKVGFSDGKTGTLIGLPDNIRAGDITAVAPVGGDTWAVRTVPEVSGGMVVEDPQNGRILAMQGGFDARLGSFNRATQANR QPGSTIKPFVYATGLDNGMTPASMVVDGPFCVYQGAALGEKCFRNFNNEGGAGSHTMRWGLEQSRNLMTVRIANDVGMDK VVRTIKAVGIGQYEPYLSMALGAGDTTVLKMVNAYAALANQGRQHEPTLIDYVQDRNGKVIWRADNRRCDGCSMPQWDGK QMPRLKPTGKQVMDARTAYQVVHMLEGVVVRGTAVSLRDLGLPLFGKTGTTSGPTNVWFVGGSPDIIAGVYVGYDQPRSL GGYAQGGRIAAPVFKQLVQETRSRWKDIPFAVPEGVRMVKIDRVSGKRVFGGTPENDVAKASVIWEAFKPDTEPRRTARE GEVSAKQAVIDALRKARTARGIPEGGAEEAPVEQDFLEEQGGIY
Sequences:
>Translated_844_residues MAEETPVQSRFTLLREEGRVRWQSFTRWYRAKWGESRRFRIGNYVLGALLAGWIVLWVVVSSALPSADKLLTYQPPLPTM VRGNDGEIVSSYARERRVQLRFVDFPEPLINAFLSAEDKTFWTHGGIDYLGFAGAVVDYVTKYGSGERARGGSTITQQVA KNILIGDEYSITRKLKEMILARRIEGVLDKQQILELYLNEIPLGRQSFGVQAAARAYFDKDVGDLQLHEAAFLAILPKAP ERYGRAKYEQQAITRRNWVLDQMVKNGWATPEAAAAAKAMPLGLKPRRAENYNTDAGYFLEEVRRQLIDKFGEKAEDGPH SVYAGGLWVRTSLDTQLQTASQNALRAALLRYSGGRAWHGPIARIDVDGDRWQTELITSNISIRYQNWRVGVLLSRSGSS GKVGFSDGKTGTLIGLPDNIRAGDITAVAPVGGDTWAVRTVPEVSGGMVVEDPQNGRILAMQGGFDARLGSFNRATQANR QPGSTIKPFVYATGLDNGMTPASMVVDGPFCVYQGAALGEKCFRNFNNEGGAGSHTMRWGLEQSRNLMTVRIANDVGMDK VVRTIKAVGIGQYEPYLSMALGAGDTTVLKMVNAYAALANQGRQHEPTLIDYVQDRNGKVIWRADNRRCDGCSMPQWDGK QMPRLKPTGKQVMDARTAYQVVHMLEGVVVRGTAVSLRDLGLPLFGKTGTTSGPTNVWFVGGSPDIIAGVYVGYDQPRSL GGYAQGGRIAAPVFKQLVQETRSRWKDIPFAVPEGVRMVKIDRVSGKRVFGGTPENDVAKASVIWEAFKPDTEPRRTARE GEVSAKQAVIDALRKARTARGIPEGGAEEAPVEQDFLEEQGGIY >Mature_843_residues AEETPVQSRFTLLREEGRVRWQSFTRWYRAKWGESRRFRIGNYVLGALLAGWIVLWVVVSSALPSADKLLTYQPPLPTMV RGNDGEIVSSYARERRVQLRFVDFPEPLINAFLSAEDKTFWTHGGIDYLGFAGAVVDYVTKYGSGERARGGSTITQQVAK NILIGDEYSITRKLKEMILARRIEGVLDKQQILELYLNEIPLGRQSFGVQAAARAYFDKDVGDLQLHEAAFLAILPKAPE RYGRAKYEQQAITRRNWVLDQMVKNGWATPEAAAAAKAMPLGLKPRRAENYNTDAGYFLEEVRRQLIDKFGEKAEDGPHS VYAGGLWVRTSLDTQLQTASQNALRAALLRYSGGRAWHGPIARIDVDGDRWQTELITSNISIRYQNWRVGVLLSRSGSSG KVGFSDGKTGTLIGLPDNIRAGDITAVAPVGGDTWAVRTVPEVSGGMVVEDPQNGRILAMQGGFDARLGSFNRATQANRQ PGSTIKPFVYATGLDNGMTPASMVVDGPFCVYQGAALGEKCFRNFNNEGGAGSHTMRWGLEQSRNLMTVRIANDVGMDKV VRTIKAVGIGQYEPYLSMALGAGDTTVLKMVNAYAALANQGRQHEPTLIDYVQDRNGKVIWRADNRRCDGCSMPQWDGKQ MPRLKPTGKQVMDARTAYQVVHMLEGVVVRGTAVSLRDLGLPLFGKTGTTSGPTNVWFVGGSPDIIAGVYVGYDQPRSLG GYAQGGRIAAPVFKQLVQETRSRWKDIPFAVPEGVRMVKIDRVSGKRVFGGTPENDVAKASVIWEAFKPDTEPRRTAREG EVSAKQAVIDALRKARTARGIPEGGAEEAPVEQDFLEEQGGIY
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=814, Percent_Identity=29.3611793611794, Blast_Score=311, Evalue=8e-86, Organism=Escherichia coli, GI1786343, Length=261, Percent_Identity=31.0344827586207, Blast_Score=107, Evalue=3e-24, Organism=Escherichia coli, GI1788867, Length=179, Percent_Identity=35.195530726257, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI1789601, Length=156, Percent_Identity=37.8205128205128, Blast_Score=87, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 92926; Mature: 92795
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEETPVQSRFTLLREEGRVRWQSFTRWYRAKWGESRRFRIGNYVLGALLAGWIVLWVVV CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHH SSALPSADKLLTYQPPLPTMVRGNDGEIVSSYARERRVQLRFVDFPEPLINAFLSAEDKT HHCCCCCCCEEEECCCCCCEEECCCCHHHHHHHHCCEEEEEEECCCHHHHHHHHCCCCCE FWTHGGIDYLGFAGAVVDYVTKYGSGERARGGSTITQQVAKNILIGDEYSITRKLKEMIL EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH ARRIEGVLDKQQILELYLNEIPLGRQSFGVQAAARAYFDKDVGDLQLHEAAFLAILPKAP HHHHHHHHCHHHHHHHHHHHCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHEEEEECCCCH ERYGRAKYEQQAITRRNWVLDQMVKNGWATPEAAAAAKAMPLGLKPRRAENYNTDAGYFL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH EEVRRQLIDKFGEKAEDGPHSVYAGGLWVRTSLDTQLQTASQNALRAALLRYSGGRAWHG HHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEECC PIARIDVDGDRWQTELITSNISIRYQNWRVGVLLSRSGSSGKVGFSDGKTGTLIGLPDNI CEEEEECCCCHHHHHEEECCEEEEEECEEEEEEEECCCCCCCEECCCCCCEEEEECCCCC RAGDITAVAPVGGDTWAVRTVPEVSGGMVVEDPQNGRILAMQGGFDARLGSFNRATQANR CCCCEEEEEECCCCCEEEEECCCCCCCEEEECCCCCEEEEEECCCCCCCCCCHHHHHCCC QPGSTIKPFVYATGLDNGMTPASMVVDGPFCVYQGAALGEKCFRNFNNEGGAGSHTMRWG CCCCCCCCEEEEECCCCCCCCHHEEECCCHHEECCCHHHHHHHHCCCCCCCCCCCHHEEC LEQSRNLMTVRIANDVGMDKVVRTIKAVGIGQYEPYLSMALGAGDTTVLKMVNAYAALAN HHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHEECCCCHHHHHHHHHHHHHHH QGRQHEPTLIDYVQDRNGKVIWRADNRRCDGCSMPQWDGKQMPRLKPTGKQVMDARTAYQ CCCCCCCHHHHHEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH VVHMLEGVVVRGTAVSLRDLGLPLFGKTGTTSGPTNVWFVGGSPDIIAGVYVGYDQPRSL HHHHHCCEEEECCEEEHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCC GGYAQGGRIAAPVFKQLVQETRSRWKDIPFAVPEGVRMVKIDRVSGKRVFGGTPENDVAK CCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHH ASVIWEAFKPDTEPRRTAREGEVSAKQAVIDALRKARTARGIPEGGAEEAPVEQDFLEEQ HHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC GGIY CCCC >Mature Secondary Structure AEETPVQSRFTLLREEGRVRWQSFTRWYRAKWGESRRFRIGNYVLGALLAGWIVLWVVV CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHH SSALPSADKLLTYQPPLPTMVRGNDGEIVSSYARERRVQLRFVDFPEPLINAFLSAEDKT HHCCCCCCCEEEECCCCCCEEECCCCHHHHHHHHCCEEEEEEECCCHHHHHHHHCCCCCE FWTHGGIDYLGFAGAVVDYVTKYGSGERARGGSTITQQVAKNILIGDEYSITRKLKEMIL EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH ARRIEGVLDKQQILELYLNEIPLGRQSFGVQAAARAYFDKDVGDLQLHEAAFLAILPKAP HHHHHHHHCHHHHHHHHHHHCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHEEEEECCCCH ERYGRAKYEQQAITRRNWVLDQMVKNGWATPEAAAAAKAMPLGLKPRRAENYNTDAGYFL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH EEVRRQLIDKFGEKAEDGPHSVYAGGLWVRTSLDTQLQTASQNALRAALLRYSGGRAWHG HHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEECC PIARIDVDGDRWQTELITSNISIRYQNWRVGVLLSRSGSSGKVGFSDGKTGTLIGLPDNI CEEEEECCCCHHHHHEEECCEEEEEECEEEEEEEECCCCCCCEECCCCCCEEEEECCCCC RAGDITAVAPVGGDTWAVRTVPEVSGGMVVEDPQNGRILAMQGGFDARLGSFNRATQANR CCCCEEEEEECCCCCEEEEECCCCCCCEEEECCCCCEEEEEECCCCCCCCCCHHHHHCCC QPGSTIKPFVYATGLDNGMTPASMVVDGPFCVYQGAALGEKCFRNFNNEGGAGSHTMRWG CCCCCCCCEEEEECCCCCCCCHHEEECCCHHEECCCHHHHHHHHCCCCCCCCCCCHHEEC LEQSRNLMTVRIANDVGMDKVVRTIKAVGIGQYEPYLSMALGAGDTTVLKMVNAYAALAN HHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHEECCCCHHHHHHHHHHHHHHH QGRQHEPTLIDYVQDRNGKVIWRADNRRCDGCSMPQWDGKQMPRLKPTGKQVMDARTAYQ CCCCCCCHHHHHEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH VVHMLEGVVVRGTAVSLRDLGLPLFGKTGTTSGPTNVWFVGGSPDIIAGVYVGYDQPRSL HHHHHCCEEEECCEEEHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCC GGYAQGGRIAAPVFKQLVQETRSRWKDIPFAVPEGVRMVKIDRVSGKRVFGGTPENDVAK CCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHH ASVIWEAFKPDTEPRRTAREGEVSAKQAVIDALRKARTARGIPEGGAEEAPVEQDFLEEQ HHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC GGIY CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]