| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is bcp [C]
Identifier: 87200329
GI number: 87200329
Start: 2455619
End: 2456173
Strand: Reverse
Name: bcp [C]
Synonym: Saro_2315
Alternate gene names: 87200329
Gene position: 2456173-2455619 (Counterclockwise)
Preceding gene: 87200330
Following gene: 87200328
Centisome position: 68.96
GC content: 65.23
Gene sequence:
>555_bases ATGACCAAGCTTGCGCTCACTGCCGTCACCGCAGCCTTCGCCCTCATTCTGTCCGCCCCGGCTTCCGCCGAACTGCCCAC CGGCGCGCGTGCGCCGGATTTTGCGGCGCCGGGGGCGCTGGCGGGCAAGCCGTTCTCGTTCAAGCTGCACCAGGCGTTGA AGAAGGGGCCGGTGGTGCTCTACTTCTACCCGAAGGCGTTCACGCAAGGCTGCACCCTCGAAGCCCATGCCTTTGCCGAG GCGAGCGCAGATTTCCGCGCAGCGGGGGCGACGGTGATCGGCATGTCGAACGATGATGTCGCCACGTTGCAGAAGTTCTC GACCGAGGCCTGCCGCGACAAGTTCGCCGTGGCGAGCGCCAGCGCGAACCTGATCAAGGCCTATGACGTGGACCTGAAAA AGCCTGATGGCACGTCCACCGGGCTCACCAAGCGGACGAGCTATGTGATCGGACGCAACGGGCGGATCGTCATGGTCCAT TCCGACATGGACTATCGCGACCACGTCAGGCTGACGCTCGCGGCGGTGCGCAAGCTCAAGGGCGGCAAGGGCTGA
Upstream 100 bases:
>100_bases CTGAGGCGTCAGCCGGTGGGGCATCAGTCGGTGAGGCATCAGCCGGGCCTGCCCCGAAAGGCATTGGTGGTCGCCAATTC GATCTGATAGGCTTCGCCGC
Downstream 100 bases:
>100_bases ATCCGGTCCCGCGCGCTTACTGACACACGGTTGGGCTTTACATGCCTGCCCGCTTCGCTAAGCGGCGCAGTTCATATCGT GTTTCGCGTTTGATCGGAGT
Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: Acceptor; H2O; oxidized thioredoxin [C]
Alternate protein names: Peroxiredoxin; Redoxin Domain-Containing Protein; Thioredoxin Peroxidase; Peroxiredoxin Bacterioferritin Comigratory Protein; Antioxidant AhpC/TSA Family; Redoxin; Alkyl Hydroperoxide Reductase/ Thiol Specific; 2-Cys Peroxiredoxin; AhpC/TSA Family
Number of amino acids: Translated: 184; Mature: 183
Protein sequence:
>184_residues MTKLALTAVTAAFALILSAPASAELPTGARAPDFAAPGALAGKPFSFKLHQALKKGPVVLYFYPKAFTQGCTLEAHAFAE ASADFRAAGATVIGMSNDDVATLQKFSTEACRDKFAVASASANLIKAYDVDLKKPDGTSTGLTKRTSYVIGRNGRIVMVH SDMDYRDHVRLTLAAVRKLKGGKG
Sequences:
>Translated_184_residues MTKLALTAVTAAFALILSAPASAELPTGARAPDFAAPGALAGKPFSFKLHQALKKGPVVLYFYPKAFTQGCTLEAHAFAE ASADFRAAGATVIGMSNDDVATLQKFSTEACRDKFAVASASANLIKAYDVDLKKPDGTSTGLTKRTSYVIGRNGRIVMVH SDMDYRDHVRLTLAAVRKLKGGKG >Mature_183_residues TKLALTAVTAAFALILSAPASAELPTGARAPDFAAPGALAGKPFSFKLHQALKKGPVVLYFYPKAFTQGCTLEAHAFAEA SADFRAAGATVIGMSNDDVATLQKFSTEACRDKFAVASASANLIKAYDVDLKKPDGTSTGLTKRTSYVIGRNGRIVMVHS DMDYRDHVRLTLAAVRKLKGGKG
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19397; Mature: 19265
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLALTAVTAAFALILSAPASAELPTGARAPDFAAPGALAGKPFSFKLHQALKKGPVVL CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEE YFYPKAFTQGCTLEAHAFAEASADFRAAGATVIGMSNDDVATLQKFSTEACRDKFAVASA EECCCHHCCCCCEEHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC SANLIKAYDVDLKKPDGTSTGLTKRTSYVIGRNGRIVMVHSDMDYRDHVRLTLAAVRKLK CCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHC GGKG CCCC >Mature Secondary Structure TKLALTAVTAAFALILSAPASAELPTGARAPDFAAPGALAGKPFSFKLHQALKKGPVVL CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEE YFYPKAFTQGCTLEAHAFAEASADFRAAGATVIGMSNDDVATLQKFSTEACRDKFAVASA EECCCHHCCCCCEEHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC SANLIKAYDVDLKKPDGTSTGLTKRTSYVIGRNGRIVMVHSDMDYRDHVRLTLAAVRKLK CCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHC GGKG CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: reduced acceptor; H2O2; reduced thioredoxin [C]
Specific reaction: reduced acceptor + H2O2 = Acceptor + H2O reduced thioredoxin + H2O2 = oxidized thioredoxin + H2O [C]
General reaction: Oxidoreductases; Acting on a peroxide as acceptor; Peroxidase [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA