Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is yceI [H]

Identifier: 87200279

GI number: 87200279

Start: 2404152

End: 2404811

Strand: Direct

Name: yceI [H]

Synonym: Saro_2265

Alternate gene names: 87200279

Gene position: 2404152-2404811 (Clockwise)

Preceding gene: 87200278

Following gene: 87200281

Centisome position: 67.5

GC content: 67.12

Gene sequence:

>660_bases
TTGCCCAAGCTTTCCCGCATGTCCCGCGCGCTTGCCCTCGCGTTGCCTCTCGCCCTCGCAGCCGTGGCCGCACCGATGGT
CGCGCAAATGCCCGAAGCCCCCGGCAAGGCGGACAAGAGCCGGGTCGTCGCCGGCAACTACACCGCCGACGCCGGCCATT
CCCTTGTCGCCTGGCGCGTCAACCACTTCGGCTTCAACGATTACTTCGGCCTCTTCGGCGACGTGACCGGCACTCTCCAG
ATCGACCCGGCCAATCCCGCCGCGGCCAAGGTCTCGGTCACGATCCCGGTCGGCAAGGTCGTCACGGTCAACCAGGCCCT
TACCGCCCACCTGCTCAAGCCGGGCGCCGACGGCAAGCCTGCCGACTTCTTCGGCGCGGCTCCTGCCGACGCCACTTTCG
TCTCGACCAGCGTCGCGCCCGGCGCGGACGGCAGCAGCGCCAGGATCACCGGCGATCTCACCCTCAACGGCGTGACCAGG
CCGGTCACCATCGACGCCACTTTCGCGGGCGCCGGCACCAACCCCTTCAACAAGGCAGCCACGCTCGGCTTCCACGGCAC
CGCCACGATCAAGCGGTCGGACTTCAACGTGAAGTACGGCATCCCCTTCGTCTCCGACGAAGTGAAGCTCGACATCACGG
CTGCCTTCGAAAAGAAGTAA

Upstream 100 bases:

>100_bases
GATGACAATGCGCTGCGGATGACACGCAGTTGCGTCCCCTTGTGCGGGACGACCAGCTTTGGCACCTTGCACCTCCCGAA
GTGACTTCAGGAGATCCCCC

Downstream 100 bases:

>100_bases
GCTCCTAGCACATCAGGGAAAACGCGGCCCGAAGTTCCTTCACGAAGGCTTCGGGCTGCTCCCACGCGGCAAAGTGGCCG
CCCTTTTCCAGCTCGCCCCA

Product: YceI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MPKLSRMSRALALALPLALAAVAAPMVAQMPEAPGKADKSRVVAGNYTADAGHSLVAWRVNHFGFNDYFGLFGDVTGTLQ
IDPANPAAAKVSVTIPVGKVVTVNQALTAHLLKPGADGKPADFFGAAPADATFVSTSVAPGADGSSARITGDLTLNGVTR
PVTIDATFAGAGTNPFNKAATLGFHGTATIKRSDFNVKYGIPFVSDEVKLDITAAFEKK

Sequences:

>Translated_219_residues
MPKLSRMSRALALALPLALAAVAAPMVAQMPEAPGKADKSRVVAGNYTADAGHSLVAWRVNHFGFNDYFGLFGDVTGTLQ
IDPANPAAAKVSVTIPVGKVVTVNQALTAHLLKPGADGKPADFFGAAPADATFVSTSVAPGADGSSARITGDLTLNGVTR
PVTIDATFAGAGTNPFNKAATLGFHGTATIKRSDFNVKYGIPFVSDEVKLDITAAFEKK
>Mature_218_residues
PKLSRMSRALALALPLALAAVAAPMVAQMPEAPGKADKSRVVAGNYTADAGHSLVAWRVNHFGFNDYFGLFGDVTGTLQI
DPANPAAAKVSVTIPVGKVVTVNQALTAHLLKPGADGKPADFFGAAPADATFVSTSVAPGADGSSARITGDLTLNGVTRP
VTIDATFAGAGTNPFNKAATLGFHGTATIKRSDFNVKYGIPFVSDEVKLDITAAFEKK

Specific function: Unknown

COG id: COG2353

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0312 family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787295, Length=174, Percent_Identity=41.3793103448276, Blast_Score=110, Evalue=7e-26,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007372 [H]

Pfam domain/function: PF04264 YceI [H]

EC number: NA

Molecular weight: Translated: 22512; Mature: 22381

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLSRMSRALALALPLALAAVAAPMVAQMPEAPGKADKSRVVAGNYTADAGHSLVAWRV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCEEEEEEE
NHFGFNDYFGLFGDVTGTLQIDPANPAAAKVSVTIPVGKVVTVNQALTAHLLKPGADGKP
ECCCCCHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCEEEECHHHHHHHCCCCCCCCC
ADFFGAAPADATFVSTSVAPGADGSSARITGDLTLNGVTRPVTIDATFAGAGTNPFNKAA
CCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCE
TLGFHGTATIKRSDFNVKYGIPFVSDEVKLDITAAFEKK
EECCCCEEEEEECCCEEEECCCEECCCEEEEEEEEECCC
>Mature Secondary Structure 
PKLSRMSRALALALPLALAAVAAPMVAQMPEAPGKADKSRVVAGNYTADAGHSLVAWRV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCEEEEEEE
NHFGFNDYFGLFGDVTGTLQIDPANPAAAKVSVTIPVGKVVTVNQALTAHLLKPGADGKP
ECCCCCHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCEEEECHHHHHHHCCCCCCCCC
ADFFGAAPADATFVSTSVAPGADGSSARITGDLTLNGVTRPVTIDATFAGAGTNPFNKAA
CCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCE
TLGFHGTATIKRSDFNVKYGIPFVSDEVKLDITAAFEKK
EECCCCEEEEEECCCEEEECCCEECCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA