Click here to switch to the map view.

The map label for this gene is alpA [C]

Identifier: 87200169

GI number: 87200169

Start: 2294101

End: 2294346

Strand: Reverse

Name: alpA [C]

Synonym: Saro_2153

Alternate gene names: 87200169

Gene position: 2294346-2294101 (Counterclockwise)

Preceding gene: 87200170

Following gene: 87200167

Centisome position: 64.42

GC content: 60.16

Gene sequence:

>246_bases
ATGACCGCTGCCCCCTCGAACGAAGCCACCTCTCCGCACTCTAACGAGGCGGCGCCTCTGCCCGCCCGCCTTCTGCGCTT
GCCAGATGTCATGGCTCGAGTGGGAATGAAGCGTTCCGCGATCTATCAGCGGATGAGCGAAGGCAGGTTTCCGAAATCGC
GATCGCTTGGCCCTAAATGCGCTGTGTGGGTCGAAGCGGAAATCGAGGAATGGATCGAGCAGGTGGCTAATTCCACGCAC
AGCTAG

Upstream 100 bases:

>100_bases
AACACATCGACGACTTTGCCAACCGCGACATAGCGATGTCGTTGCCAAGATGATCCGAAGCCTCGGAGGGGACCGAGATT
TGCCAAGACAGGAATGACGA

Downstream 100 bases:

>100_bases
TGCGGTTGGTTCGGTCACTGCGTCGCGATTTTCAGTGTCGAACCAATCAATCAGCTATCGCTGCTGCATCTCCGGTCGGA
TCGGTCATGCATGCTCTCCG

Product: phage transcriptional regulator AlpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 80

Protein sequence:

>81_residues
MTAAPSNEATSPHSNEAAPLPARLLRLPDVMARVGMKRSAIYQRMSEGRFPKSRSLGPKCAVWVEAEIEEWIEQVANSTH
S

Sequences:

>Translated_81_residues
MTAAPSNEATSPHSNEAAPLPARLLRLPDVMARVGMKRSAIYQRMSEGRFPKSRSLGPKCAVWVEAEIEEWIEQVANSTH
S
>Mature_80_residues
TAAPSNEATSPHSNEAAPLPARLLRLPDVMARVGMKRSAIYQRMSEGRFPKSRSLGPKCAVWVEAEIEEWIEQVANSTHS

Specific function: Positive Regulator Of The Expression Of The Slpa Gene. [C]

COG id: COG3311

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8948; Mature: 8817

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAPSNEATSPHSNEAAPLPARLLRLPDVMARVGMKRSAIYQRMSEGRFPKSRSLGPKC
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCE
AVWVEAEIEEWIEQVANSTHS
EEEEHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TAAPSNEATSPHSNEAAPLPARLLRLPDVMARVGMKRSAIYQRMSEGRFPKSRSLGPKC
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCE
AVWVEAEIEEWIEQVANSTHS
EEEEHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA