| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200167
Identifier: 87200167
GI number: 87200167
Start: 2292907
End: 2293533
Strand: Reverse
Name: 87200167
Synonym: Saro_2151
Alternate gene names: NA
Gene position: 2293533-2292907 (Counterclockwise)
Preceding gene: 87200169
Following gene: 87200166
Centisome position: 64.4
GC content: 63.48
Gene sequence:
>627_bases TTGGCCGACAGCTGCTGCGAAAACGCGTGCGGAAGCGCGAAGACGCTGAATGATCCGCATTGGCGACGTGCGCTGTGGAT CGCTCTAGCAGTCAATGCAGGGATGTTCGGCGTCGATATGTTTGCAGGCTCGGCGGCCGATAGCCGCGCCCTTCAGGCTG ATGCGCTCGATTTCCTGGGGGATGCAGCCAACTACGCCATCAGTCTGCTGGTCGCCGGAATGGCGGTCAGCTGGCGCGCG CGGGCCGCTCTCGCCAAAGGGCTGACCCTCGTGGCGTTTGGTGGCTGGGTACTGCTGACCGCAGTCATGGCAACCCTAGG TGGCGCATCACCAGAGCCAGCGACGATGGGAATCGTCGGGTTTCTGGCGCTCGTGACCAATGCGGGCGTCGCGTTGATGC TCTACCGCTTCCGCACCGGGGACGCGAACATGCGGTCAGTGTGGATCTGCTCGCGCAATGATGCGGTCGGTAATCTGGCT GTCATGGCCGCCGCGTTGGGTGTCTTTGGAACCGGCAGCGCGTGGCCTGACCTTATCGTGGCGGCAATTCTGGCATCACT CGGCATCAGCGGCGGTCTCCAGATCGTGCGCCATGCGATGCGCGAGATGCAGGAGGCAACCGCATGA
Upstream 100 bases:
>100_bases CGGTCACCTTCGACAACTCGCCGATTTTCATTGCTTGACCCTGTAGTTGCTACAGGGTGTACGTAGCAAGCCGACTCGAA AATTGTCGAGGAGGAATTCG
Downstream 100 bases:
>100_bases CGCGCGATCTCGCACAGGCGGTCGTGGCGGAGGAAATGACGGCCTTCGACCTGGCTCGCGCCGCTGGCGAGACCGCGAAC GCGTGGCGGGCGCTTGAGCG
Product: cation efflux protein
Products: NA
Alternate protein names: Co/Zn/Cd Efflux System Component; Cation Efflux Family Protein; Cation Efflux System Protein; Integral Membrane Protein; Co/Zn/Cd Efflux System Membrane Component; Cation Efflux Permease; Cation Efflux System Permease; Cation Diffusion Facilitator Family Transporter; Cation Diffusion Facilitator; Heavy Metal Detoxification Protein; Transmembrane Protein; Cobalt-Zinc-Cadmium Resistance Protein; Cation Efflux Protein ; CDF Family Heavy Metal/H(+) Antiporter; Co/Zn/Cd Efflux Protein; RND OM Export Protein; RND Efflux System Protein; Co/Zn/Cd Efflux System Protein; Zinc Transporter; CDF Family Cobalt/Cadmium/Zinc Transporter
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MADSCCENACGSAKTLNDPHWRRALWIALAVNAGMFGVDMFAGSAADSRALQADALDFLGDAANYAISLLVAGMAVSWRA RAALAKGLTLVAFGGWVLLTAVMATLGGASPEPATMGIVGFLALVTNAGVALMLYRFRTGDANMRSVWICSRNDAVGNLA VMAAALGVFGTGSAWPDLIVAAILASLGISGGLQIVRHAMREMQEATA
Sequences:
>Translated_208_residues MADSCCENACGSAKTLNDPHWRRALWIALAVNAGMFGVDMFAGSAADSRALQADALDFLGDAANYAISLLVAGMAVSWRA RAALAKGLTLVAFGGWVLLTAVMATLGGASPEPATMGIVGFLALVTNAGVALMLYRFRTGDANMRSVWICSRNDAVGNLA VMAAALGVFGTGSAWPDLIVAAILASLGISGGLQIVRHAMREMQEATA >Mature_207_residues ADSCCENACGSAKTLNDPHWRRALWIALAVNAGMFGVDMFAGSAADSRALQADALDFLGDAANYAISLLVAGMAVSWRAR AALAKGLTLVAFGGWVLLTAVMATLGGASPEPATMGIVGFLALVTNAGVALMLYRFRTGDANMRSVWICSRNDAVGNLAV MAAALGVFGTGSAWPDLIVAAILASLGISGGLQIVRHAMREMQEATA
Specific function: Unknown
COG id: COG1230
COG function: function code P; Co/Zn/Cd efflux system component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21423; Mature: 21292
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADSCCENACGSAKTLNDPHWRRALWIALAVNAGMFGVDMFAGSAADSRALQADALDFLG CCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHH DAANYAISLLVAGMAVSWRARAALAKGLTLVAFGGWVLLTAVMATLGGASPEPATMGIVG HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHCCCCCCCHHHHHHH FLALVTNAGVALMLYRFRTGDANMRSVWICSRNDAVGNLAVMAAALGVFGTGSAWPDLIV HHHHHHCCCHHHHHEEHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHH AAILASLGISGGLQIVRHAMREMQEATA HHHHHHHCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure ADSCCENACGSAKTLNDPHWRRALWIALAVNAGMFGVDMFAGSAADSRALQADALDFLG CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHH DAANYAISLLVAGMAVSWRARAALAKGLTLVAFGGWVLLTAVMATLGGASPEPATMGIVG HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHCCCCCCCHHHHHHH FLALVTNAGVALMLYRFRTGDANMRSVWICSRNDAVGNLAVMAAALGVFGTGSAWPDLIV HHHHHHCCCHHHHHEEHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHH AAILASLGISGGLQIVRHAMREMQEATA HHHHHHHCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA