| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200060
Identifier: 87200060
GI number: 87200060
Start: 2181960
End: 2183027
Strand: Direct
Name: 87200060
Synonym: Saro_2044
Alternate gene names: NA
Gene position: 2181960-2183027 (Clockwise)
Preceding gene: 87200059
Following gene: 87200067
Centisome position: 61.26
GC content: 62.36
Gene sequence:
>1068_bases TTGCTCCGCTTCTACAAGGGTTCGATCCTCTTCACGCTCGTATGCCTTGCACTGGCGGTGGCCTATGGCTGGATGCAGAC CGGGACCGCGTCGGGCACGATGTCGCTGGTATGGATCGTGTTCGTGCTGTCGATCCTCGAAATCTCGCTGTCGTTCGACA ACGCCGTGGTCAACGCCGCCGTGCTGGAGGACATGGACGAAGTCTGGCAGAAGCGCTTCCTCACCTGGGGCATGGTGATC GCCGTGTTCGGGATGCGGATCGTCTTCCCGTTGGCGATCGTGGCGATTGCCGCAGGGTTAGGCCCGATCGAGGCACTGAA CCTCTCGCTGAAGGACCCGAAGCGCTACGAGGAGATCGTCAGCAGCGCCCACGTCGGCATTGCCGGCTTCGGCGGAGCCT TCCTGGCGATGGTCGGGCTTTCGTTCTTCTTCGACGGAGAGAAGGAAGTCCACTGGATCAAGTGGGTGGAGGAAAAGCTC GCCGTCGTCTCGAACATAAAGGCCGCAGAGATCGCGCTGCTGCTCCTGTCGATCTATGGCATCTCGCTGATCCTTCCGCC GGAGGAAGCGCTGACGTTCGTCGTCGCGGGCGTTCTCGGCCTCGTCACGTTCATCGCGGTCGAAGCGCTCGGCACGATCC TTGAAATGCGCGAGGAAGCGCAGAAGGCGGCGGGCGTGGTGGTTCGCTCGGGCCTGGGCGGTTTCCTCTACCTCAACGTG CTCGACGCCTCGTTCAGCTTCGACGGCGTGATCGGCGCCTTCGCGCTTTCCAACAACATGGTGATCATCGCTCTCGGCCT TTCGATCGGTGCGATGTTCGTCCGCTCGATGACGATCATGCTGGTCCAGAAGGGCACGCTCTCGGAGTATCGCTACCTCG AACACGGCGCATTCTGGGCGATCATCGCGCTCGGTGCGATCATGCTGCTGTCGGCGCGCTACCACATCCCCGAAACGGTC ACGGGTCTGATCGGTGCGGCGCTGATCGGCCTATCGCTGTGGTGGTCGATCCGCCACAAGCGCAAGTACCCCGATGCCGA ACTGGACGCCGCCGTAAGGGCCGACTGA
Upstream 100 bases:
>100_bases CAGACGTACCAGCCCAAGTAACCGTCACGCCGAGGTAACCGTCACGGCCAGGCCATCGTCACACCTCGGCCGGCACACCA AGACAGACAGGGAATTCCGC
Downstream 100 bases:
>100_bases CTTCAGCCGCCCTCGCGCGCGGCCAGCGAGGGCTGCGGCGCCGGCGTTCCGAGAAAGCGGGGCGCGGGCGCGGGCATGAC CATGCCGCCGTCCTCGACGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MLRFYKGSILFTLVCLALAVAYGWMQTGTASGTMSLVWIVFVLSILEISLSFDNAVVNAAVLEDMDEVWQKRFLTWGMVI AVFGMRIVFPLAIVAIAAGLGPIEALNLSLKDPKRYEEIVSSAHVGIAGFGGAFLAMVGLSFFFDGEKEVHWIKWVEEKL AVVSNIKAAEIALLLLSIYGISLILPPEEALTFVVAGVLGLVTFIAVEALGTILEMREEAQKAAGVVVRSGLGGFLYLNV LDASFSFDGVIGAFALSNNMVIIALGLSIGAMFVRSMTIMLVQKGTLSEYRYLEHGAFWAIIALGAIMLLSARYHIPETV TGLIGAALIGLSLWWSIRHKRKYPDAELDAAVRAD
Sequences:
>Translated_355_residues MLRFYKGSILFTLVCLALAVAYGWMQTGTASGTMSLVWIVFVLSILEISLSFDNAVVNAAVLEDMDEVWQKRFLTWGMVI AVFGMRIVFPLAIVAIAAGLGPIEALNLSLKDPKRYEEIVSSAHVGIAGFGGAFLAMVGLSFFFDGEKEVHWIKWVEEKL AVVSNIKAAEIALLLLSIYGISLILPPEEALTFVVAGVLGLVTFIAVEALGTILEMREEAQKAAGVVVRSGLGGFLYLNV LDASFSFDGVIGAFALSNNMVIIALGLSIGAMFVRSMTIMLVQKGTLSEYRYLEHGAFWAIIALGAIMLLSARYHIPETV TGLIGAALIGLSLWWSIRHKRKYPDAELDAAVRAD >Mature_355_residues MLRFYKGSILFTLVCLALAVAYGWMQTGTASGTMSLVWIVFVLSILEISLSFDNAVVNAAVLEDMDEVWQKRFLTWGMVI AVFGMRIVFPLAIVAIAAGLGPIEALNLSLKDPKRYEEIVSSAHVGIAGFGGAFLAMVGLSFFFDGEKEVHWIKWVEEKL AVVSNIKAAEIALLLLSIYGISLILPPEEALTFVVAGVLGLVTFIAVEALGTILEMREEAQKAAGVVVRSGLGGFLYLNV LDASFSFDGVIGAFALSNNMVIIALGLSIGAMFVRSMTIMLVQKGTLSEYRYLEHGAFWAIIALGAIMLLSARYHIPETV TGLIGAALIGLSLWWSIRHKRKYPDAELDAAVRAD
Specific function: Unknown
COG id: COG2899
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38445; Mature: 38445
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRFYKGSILFTLVCLALAVAYGWMQTGTASGTMSLVWIVFVLSILEISLSFDNAVVNAA CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH VLEDMDEVWQKRFLTWGMVIAVFGMRIVFPLAIVAIAAGLGPIEALNLSLKDPKRYEEIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHH SSAHVGIAGFGGAFLAMVGLSFFFDGEKEVHWIKWVEEKLAVVSNIKAAEIALLLLSIYG HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC ISLILPPEEALTFVVAGVLGLVTFIAVEALGTILEMREEAQKAAGVVVRSGLGGFLYLNV CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE LDASFSFDGVIGAFALSNNMVIIALGLSIGAMFVRSMTIMLVQKGTLSEYRYLEHGAFWA HHCCCCCCHHHHHHEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHH IIALGAIMLLSARYHIPETVTGLIGAALIGLSLWWSIRHKRKYPDAELDAAVRAD HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCHHHCCC >Mature Secondary Structure MLRFYKGSILFTLVCLALAVAYGWMQTGTASGTMSLVWIVFVLSILEISLSFDNAVVNAA CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH VLEDMDEVWQKRFLTWGMVIAVFGMRIVFPLAIVAIAAGLGPIEALNLSLKDPKRYEEIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHH SSAHVGIAGFGGAFLAMVGLSFFFDGEKEVHWIKWVEEKLAVVSNIKAAEIALLLLSIYG HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC ISLILPPEEALTFVVAGVLGLVTFIAVEALGTILEMREEAQKAAGVVVRSGLGGFLYLNV CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE LDASFSFDGVIGAFALSNNMVIIALGLSIGAMFVRSMTIMLVQKGTLSEYRYLEHGAFWA HHCCCCCCHHHHHHEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHH IIALGAIMLLSARYHIPETVTGLIGAALIGLSLWWSIRHKRKYPDAELDAAVRAD HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA