| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200042
Identifier: 87200042
GI number: 87200042
Start: 2159925
End: 2160737
Strand: Reverse
Name: 87200042
Synonym: Saro_2026
Alternate gene names: NA
Gene position: 2160737-2159925 (Counterclockwise)
Preceding gene: 87200046
Following gene: 87200041
Centisome position: 60.67
GC content: 58.67
Gene sequence:
>813_bases ATGACCAATGAAACGCGACCGCCTCGACTGGCAGTGCTTATAGATGCCGACAATGCTTCCGCGAAGATTGCGACAGGCCT GTTCGAGGAGGTTGCCAAGCTCGGCGAGGCCAGCGTTCGGAGAATTTACGGGGACTTCTCCGGGACCAGGCTGAAGGCTT GGGCCGATGTCCTCGCCCGCCACGCGATCAAGGCGCAGCAGAATTTTGCTTACACCTCCGGCAAGAATGCATCCGACATT GCGCTTGTGATTGACGCGATGGACCTTCTGCATTCCGGTCGTTTCGACGGTTTCTGCCTCGTTTCCTCCGATAGCGACTT CACCGGTTTGGCGGCGCGCATCCGCGAACAAGGTCTTGATGTCTACGGCTTTGGAGAGAAGAAAACGCCCGAAAGCTTCC GGCAAGCCTGCAAGCGCTTCATCTATACAGAGAATCTGCTTGAACCTTCCGTTGTCGACATCACACCTGCGGTGGCCGCC AAACCCGCATCGTCGGAGGCCCAAGGGGCGCCCGTGTTGCCTGCGCCTGCCCCGTGCGCCGATGCCGCAAAGGAACCCGT GAAGTTTCCCCCGAGCAAGGCACGGCCAGTATTAAGGAAGGCCATCGAGCAGTCCGCCGATGAAAGCGGATGGGCCCATC TGACACGCGTCGGGCAACAGGCCAGCGCACTTCAACCGGATTTCGATGTCCGTAACTACACCGGAGTTTCAAAGCTCCGG GAACTCGTCGCCAAGGCAGGCGGGTTTGAGATAAACCAGGTTGGGGAAACCATTTGGCTCGTCAGGATCAAGCCGGCCAA TAACGTCGCATGA
Upstream 100 bases:
>100_bases TGGTTGGAGAGTGACATGGCCCGACCGTGTAGGACAGCCGACCGGTCCGGATCGGGTGCTTGTTGGCAATTCGTTAGCAA TCACACTGCAAGTTCGCGGG
Downstream 100 bases:
>100_bases CGGTGCATTTGCTCTTGTTTCGGTAGCGTGAGCCGAGCAAGTCGGGGCAGGTGTCTCGACTTCGCCGGGCACCAACGGAC ATTGGTGGCTTGCACCGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MTNETRPPRLAVLIDADNASAKIATGLFEEVAKLGEASVRRIYGDFSGTRLKAWADVLARHAIKAQQNFAYTSGKNASDI ALVIDAMDLLHSGRFDGFCLVSSDSDFTGLAARIREQGLDVYGFGEKKTPESFRQACKRFIYTENLLEPSVVDITPAVAA KPASSEAQGAPVLPAPAPCADAAKEPVKFPPSKARPVLRKAIEQSADESGWAHLTRVGQQASALQPDFDVRNYTGVSKLR ELVAKAGGFEINQVGETIWLVRIKPANNVA
Sequences:
>Translated_270_residues MTNETRPPRLAVLIDADNASAKIATGLFEEVAKLGEASVRRIYGDFSGTRLKAWADVLARHAIKAQQNFAYTSGKNASDI ALVIDAMDLLHSGRFDGFCLVSSDSDFTGLAARIREQGLDVYGFGEKKTPESFRQACKRFIYTENLLEPSVVDITPAVAA KPASSEAQGAPVLPAPAPCADAAKEPVKFPPSKARPVLRKAIEQSADESGWAHLTRVGQQASALQPDFDVRNYTGVSKLR ELVAKAGGFEINQVGETIWLVRIKPANNVA >Mature_269_residues TNETRPPRLAVLIDADNASAKIATGLFEEVAKLGEASVRRIYGDFSGTRLKAWADVLARHAIKAQQNFAYTSGKNASDIA LVIDAMDLLHSGRFDGFCLVSSDSDFTGLAARIREQGLDVYGFGEKKTPESFRQACKRFIYTENLLEPSVVDITPAVAAK PASSEAQGAPVLPAPAPCADAAKEPVKFPPSKARPVLRKAIEQSADESGWAHLTRVGQQASALQPDFDVRNYTGVSKLRE LVAKAGGFEINQVGETIWLVRIKPANNVA
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29098; Mature: 28967
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNETRPPRLAVLIDADNASAKIATGLFEEVAKLGEASVRRIYGDFSGTRLKAWADVLAR CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH HAIKAQQNFAYTSGKNASDIALVIDAMDLLHSGRFDGFCLVSSDSDFTGLAARIREQGLD HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCC VYGFGEKKTPESFRQACKRFIYTENLLEPSVVDITPAVAAKPASSEAQGAPVLPAPAPCA EEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCH DAAKEPVKFPPSKARPVLRKAIEQSADESGWAHLTRVGQQASALQPDFDVRNYTGVSKLR HHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH ELVAKAGGFEINQVGETIWLVRIKPANNVA HHHHHHCCCCHHCCCCEEEEEEECCCCCCC >Mature Secondary Structure TNETRPPRLAVLIDADNASAKIATGLFEEVAKLGEASVRRIYGDFSGTRLKAWADVLAR CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH HAIKAQQNFAYTSGKNASDIALVIDAMDLLHSGRFDGFCLVSSDSDFTGLAARIREQGLD HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCC VYGFGEKKTPESFRQACKRFIYTENLLEPSVVDITPAVAAKPASSEAQGAPVLPAPAPCA EEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCH DAAKEPVKFPPSKARPVLRKAIEQSADESGWAHLTRVGQQASALQPDFDVRNYTGVSKLR HHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH ELVAKAGGFEINQVGETIWLVRIKPANNVA HHHHHHCCCCHHCCCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA