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The map label for this gene is irgA [H]

Identifier: 87199885

GI number: 87199885

Start: 1969087

End: 1971690

Strand: Direct

Name: irgA [H]

Synonym: Saro_1868

Alternate gene names: 87199885

Gene position: 1969087-1971690 (Clockwise)

Preceding gene: 87199884

Following gene: 87199886

Centisome position: 55.29

GC content: 64.48

Gene sequence:

>2604_bases
ATGCCCGGCGCCAGCAGCAAGAATCAACAGGGAGAGACCAACATGAGATTTGCATCGATCTCCATCGCAGCGCTCGCGAC
AGCGATCGCCGCACCTGCCTTTGCGCAGGACCAGGCCCAGGCCGACGACACCCGCAGCGGTGGCATCGCCGAGATCGTCG
TGACCGCGCAGAAGCGCGCGGAAAACGTCCAGGACGTGCCGATCGCCATCACCGCGTTTACCGCCGGTGCACTGCAGGAA
CGCGCCGTGGGCGACGTTTCGGCGCTTTCCGGCATCACCCCCAACGTGACGCTCGACGCATCGACCCCGTTCTCCGGTTC
GAGCGCGGTGCTGGGTGCGACCATCCGCGGCATCGGTTCGTCGGACTTCGCCTTCAACATCGACCCCGCTGTCGGCGTTT
ATCTTGACGGCGTCTACCTTGGCCGTTCGATCGGCGCGAACCAGGACCTGCTCGACGTCGAGCGCATCGAAGTCCTGAAG
GGCCCGCAGGGCACGCTGTTCGGCCGCAACACCATCGGCGGCGCGATCTCGATCGTGACCCACAACCCCGGTGACGAATT
CCATGCCAAGGGCGACGTCACGGTTGGCCGTTTCAACCGCATCCAGGCGCGCGGGCTGGTCGACATTCCGCTGGCTCCGG
GCCTCAGCTCGTCGGTTGCCTTCGGTCTGCACAAGCGCGACGGCTTCCAGAAGCGCGTCGCCTATTCCGATCCCGGCGCG
AACGACAGCTTCACACTGTTCCCGGCTTCGGGCTACGAAACCCGCAGCCGCCAGGGGGGCGACAATTCGTGGAACCTGCG
CGGCAAGCTGCGCTGGGACGACGGCGGCAAGTTCCGCGCCACCTTCAGCGCCGACTATACCAACATCGACCAGGATTCGA
CGGCCAACACCGTGCTTGCCGTCACCCCGATCCCGGGGCCGTTCGCGGGCGTTGCCGAGAACAACATTCCGGGCACCGCG
CTTGACGTCGTCACCGGCAGCTCGGGCTTCCTGTTCGCAGGTCTCTACAACTTCTGCATTGGAGCCACCGCACAGCAGAT
CGCCGACCGCAATGCGACCAACCTGTGCGGCCCGCGTTCGAGCGTCAACGGCTACCTGACCCTGCCGGGTCTCGCCAGCC
GCAACGTCGACGGTGACCCGTACAACGACCTGCTGCCTTACGACGGCCGCTGGGTGAACACCGACAAGGACGTCAGCTAC
GCCAACGGCAACAACTTCTCGAAGCTGAAGCAGTGGGGCCTTGGTCTCAACCTCGAGTACGACCTGACTGACAACATCGC
GCTGAAGTCGATCACGTCGTATCGCGAAGTGGACTTCAAGGCAGGCGTCGACCTCGACAACTCGCCGCTGCCGATCCTCC
AGACGAGCTTCATCGTCGACCAGTACCAGTTCAGCCAGGAAGTCCAGCTTACCGGTTCGGCAATGGACGGCGCCCTGAAC
TTCGTGCTCGGCGGCTATGGCTTCAAGGAAAACGGCGACCTGCGCGACTTCGTGACCTTCTCGGCCGGCCTGCTGCAGGT
TGACGGTCCGGGCAAGGTCGACACCGAGGCCTATGCCGGGTTCGGTCAGGTCGACTGGCGCGTGAACGACCTCATCGGTA
TCTCGGTGGGCGCGCGCTACACCAAGGAGAACAAGCGCTACGACGGTGCGCAGTCGGACATCAACGGCTTCAACTACAAG
CTGTTCAACTGCATGGCGCTGGACCCGGCGACCGGCAACCCGAGCGCGGAATGCGCCGCGGGCGTCGGCTTCCCGATCCC
GTCGGAACCGTTCCGCTACTATCCAACTTCGCCGAACAAGCAGACCTTCGACGACTTCTCGTACAAGCTGGGCCTCCAGC
TTCACCCGACCGAAGACGTCATGGCCTATGGCTCGTTCTCGCGCGGGTACAAGACGGGTGGCTGGACGACGCGCCTGTCC
AACCCGCTGCCGGTCGCGCCGACCTTCGGCGAGGAAGTTGCCGAGACCTTCGAGGCTGGCGTCAAGTCGACGCTGCTTGA
CCGTCGCCTGCAGCTGAATGCAGCGGTGTTCACGACCAAGTACAAGGGCATCCAGCTCAACTTCCAGCAGGGCGTTTCGC
CGACCATCCAGAACGCAGGCGACGCGCGGATCAAGGGCTTCGAGATCGAGGCGGTTGCCGCCCCGGCCGATGGCTTCACG
ATCACCGCTTCGGCGGGCTACCTCGACGCCTACTACACCAACGTGCTGGCGCCGGCGCAGGTTGCGCCCAACCCGTTCCA
GCTCGGCGTGCAGAAGGGGTCGGCCCTGCCCAAGGCTCCGGAGTGGAAGTTCAACGTCTCGCCGCGCTATGAAGTGGCAG
TGGGCAACGGCAAGATCGTAGCCCTGGCCGACTGGACCCACACCACCGGCATGCGCAACGATACCGAAGGCACCATCCTG
CTGCTGCGTCCGACGACCGACATCGTCAACGCCAGCCTGCAGTACCAGGCTCCCGACAACCAGTGGAACCTGACGGTCGG
CGGGACCAACATCACCAACGAACGCTATCTGGTGACCGGTCAGGCCCAGATCGCGGGCGGCCAGATCTACGGCACCTACA
GCCGTCCGGCCGAATGGTACGTCAGGCTCGGTTTCGAGTTCTGA

Upstream 100 bases:

>100_bases
CAATATGAGGCTTGCGCGGCAGTCCTGATCCGGTTGCGCACCAGTGCAAGCGGAAGGGGCAGGCAGTCGGTAGACATGCC
TGCGTGAGGCCGGGGCCGGG

Downstream 100 bases:

>100_bases
TGATGTGAACGGATGCGCGGGCGGGGGCGTTTTCCCCGCGGTCCCGCCCGCGCACCGTAATGCTTGGAGAGAGACGATGC
CTGAAGCGGCGCACACGGAA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 867; Mature: 866

Protein sequence:

>867_residues
MPGASSKNQQGETNMRFASISIAALATAIAAPAFAQDQAQADDTRSGGIAEIVVTAQKRAENVQDVPIAITAFTAGALQE
RAVGDVSALSGITPNVTLDASTPFSGSSAVLGATIRGIGSSDFAFNIDPAVGVYLDGVYLGRSIGANQDLLDVERIEVLK
GPQGTLFGRNTIGGAISIVTHNPGDEFHAKGDVTVGRFNRIQARGLVDIPLAPGLSSSVAFGLHKRDGFQKRVAYSDPGA
NDSFTLFPASGYETRSRQGGDNSWNLRGKLRWDDGGKFRATFSADYTNIDQDSTANTVLAVTPIPGPFAGVAENNIPGTA
LDVVTGSSGFLFAGLYNFCIGATAQQIADRNATNLCGPRSSVNGYLTLPGLASRNVDGDPYNDLLPYDGRWVNTDKDVSY
ANGNNFSKLKQWGLGLNLEYDLTDNIALKSITSYREVDFKAGVDLDNSPLPILQTSFIVDQYQFSQEVQLTGSAMDGALN
FVLGGYGFKENGDLRDFVTFSAGLLQVDGPGKVDTEAYAGFGQVDWRVNDLIGISVGARYTKENKRYDGAQSDINGFNYK
LFNCMALDPATGNPSAECAAGVGFPIPSEPFRYYPTSPNKQTFDDFSYKLGLQLHPTEDVMAYGSFSRGYKTGGWTTRLS
NPLPVAPTFGEEVAETFEAGVKSTLLDRRLQLNAAVFTTKYKGIQLNFQQGVSPTIQNAGDARIKGFEIEAVAAPADGFT
ITASAGYLDAYYTNVLAPAQVAPNPFQLGVQKGSALPKAPEWKFNVSPRYEVAVGNGKIVALADWTHTTGMRNDTEGTIL
LLRPTTDIVNASLQYQAPDNQWNLTVGGTNITNERYLVTGQAQIAGGQIYGTYSRPAEWYVRLGFEF

Sequences:

>Translated_867_residues
MPGASSKNQQGETNMRFASISIAALATAIAAPAFAQDQAQADDTRSGGIAEIVVTAQKRAENVQDVPIAITAFTAGALQE
RAVGDVSALSGITPNVTLDASTPFSGSSAVLGATIRGIGSSDFAFNIDPAVGVYLDGVYLGRSIGANQDLLDVERIEVLK
GPQGTLFGRNTIGGAISIVTHNPGDEFHAKGDVTVGRFNRIQARGLVDIPLAPGLSSSVAFGLHKRDGFQKRVAYSDPGA
NDSFTLFPASGYETRSRQGGDNSWNLRGKLRWDDGGKFRATFSADYTNIDQDSTANTVLAVTPIPGPFAGVAENNIPGTA
LDVVTGSSGFLFAGLYNFCIGATAQQIADRNATNLCGPRSSVNGYLTLPGLASRNVDGDPYNDLLPYDGRWVNTDKDVSY
ANGNNFSKLKQWGLGLNLEYDLTDNIALKSITSYREVDFKAGVDLDNSPLPILQTSFIVDQYQFSQEVQLTGSAMDGALN
FVLGGYGFKENGDLRDFVTFSAGLLQVDGPGKVDTEAYAGFGQVDWRVNDLIGISVGARYTKENKRYDGAQSDINGFNYK
LFNCMALDPATGNPSAECAAGVGFPIPSEPFRYYPTSPNKQTFDDFSYKLGLQLHPTEDVMAYGSFSRGYKTGGWTTRLS
NPLPVAPTFGEEVAETFEAGVKSTLLDRRLQLNAAVFTTKYKGIQLNFQQGVSPTIQNAGDARIKGFEIEAVAAPADGFT
ITASAGYLDAYYTNVLAPAQVAPNPFQLGVQKGSALPKAPEWKFNVSPRYEVAVGNGKIVALADWTHTTGMRNDTEGTIL
LLRPTTDIVNASLQYQAPDNQWNLTVGGTNITNERYLVTGQAQIAGGQIYGTYSRPAEWYVRLGFEF
>Mature_866_residues
PGASSKNQQGETNMRFASISIAALATAIAAPAFAQDQAQADDTRSGGIAEIVVTAQKRAENVQDVPIAITAFTAGALQER
AVGDVSALSGITPNVTLDASTPFSGSSAVLGATIRGIGSSDFAFNIDPAVGVYLDGVYLGRSIGANQDLLDVERIEVLKG
PQGTLFGRNTIGGAISIVTHNPGDEFHAKGDVTVGRFNRIQARGLVDIPLAPGLSSSVAFGLHKRDGFQKRVAYSDPGAN
DSFTLFPASGYETRSRQGGDNSWNLRGKLRWDDGGKFRATFSADYTNIDQDSTANTVLAVTPIPGPFAGVAENNIPGTAL
DVVTGSSGFLFAGLYNFCIGATAQQIADRNATNLCGPRSSVNGYLTLPGLASRNVDGDPYNDLLPYDGRWVNTDKDVSYA
NGNNFSKLKQWGLGLNLEYDLTDNIALKSITSYREVDFKAGVDLDNSPLPILQTSFIVDQYQFSQEVQLTGSAMDGALNF
VLGGYGFKENGDLRDFVTFSAGLLQVDGPGKVDTEAYAGFGQVDWRVNDLIGISVGARYTKENKRYDGAQSDINGFNYKL
FNCMALDPATGNPSAECAAGVGFPIPSEPFRYYPTSPNKQTFDDFSYKLGLQLHPTEDVMAYGSFSRGYKTGGWTTRLSN
PLPVAPTFGEEVAETFEAGVKSTLLDRRLQLNAAVFTTKYKGIQLNFQQGVSPTIQNAGDARIKGFEIEAVAAPADGFTI
TASAGYLDAYYTNVLAPAQVAPNPFQLGVQKGSALPKAPEWKFNVSPRYEVAVGNGKIVALADWTHTTGMRNDTEGTILL
LRPTTDIVNASLQYQAPDNQWNLTVGGTNITNERYLVTGQAQIAGGQIYGTYSRPAEWYVRLGFEF

Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010916
- InterPro:   IPR010917 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 92774; Mature: 92643

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGASSKNQQGETNMRFASISIAALATAIAAPAFAQDQAQADDTRSGGIAEIVVTAQKRA
CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCHHCCCCCCCCCCCCCEEEEEEEEHHHH
ENVQDVPIAITAFTAGALQERAVGDVSALSGITPNVTLDASTPFSGSSAVLGATIRGIGS
CCCCCCCEEEEEEECHHHHHHHCCCHHHHCCCCCCEEEECCCCCCCCCEEEEEEEECCCC
SDFAFNIDPAVGVYLDGVYLGRSIGANQDLLDVERIEVLKGPQGTLFGRNTIGGAISIVT
CCCEEECCCCCEEEECCEEECCCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCEEEEEE
HNPGDEFHAKGDVTVGRFNRIQARGLVDIPLAPGLSSSVAFGLHKRDGFQKRVAYSDPGA
CCCCCCCCCCCCEEECCCCEEEECCEEEECCCCCCCCHHEEEECCCCCCHHEEEECCCCC
NDSFTLFPASGYETRSRQGGDNSWNLRGKLRWDDGGKFRATFSADYTNIDQDSTANTVLA
CCCEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEE
VTPIPGPFAGVAENNIPGTALDVVTGSSGFLFAGLYNFCIGATAQQIADRNATNLCGPRS
EECCCCCCCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHHCCHHHHHHCCCCCCCCCCCC
SVNGYLTLPGLASRNVDGDPYNDLLPYDGRWVNTDKDVSYANGNNFSKLKQWGLGLNLEY
CCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCHHHHHHHCCCCEEEE
DLTDNIALKSITSYREVDFKAGVDLDNSPLPILQTSFIVDQYQFSQEVQLTGSAMDGALN
CCCCCEEHHHHHHHHHCCEECCCCCCCCCCCEEEHHHHHHHHHCCCEEEEECCHHCCEEE
FVLGGYGFKENGDLRDFVTFSAGLLQVDGPGKVDTEAYAGFGQVDWRVNDLIGISVGARY
EEEECCCCCCCCCHHHEEEECCCEEEECCCCCCCHHHHCCCCEEEEEEEEEEEEECCCEE
TKENKRYDGAQSDINGFNYKLFNCMALDPATGNPSAECAAGVGFPIPSEPFRYYPTSPNK
CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHCCCCCCCCCCCCEECCCCCCC
QTFDDFSYKLGLQLHPTEDVMAYGSFSRGYKTGGWTTRLSNPLPVAPTFGEEVAETFEAG
CCCCCCCEEEEEEECCCHHHHEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
VKSTLLDRRLQLNAAVFTTKYKGIQLNFQQGVSPTIQNAGDARIKGFEIEAVAAPADGFT
HHHHHHHHHHEEEEEEEEEEECCEEEEHHCCCCHHHCCCCCCEEEEEEEEEEECCCCCEE
ITASAGYLDAYYTNVLAPAQVAPNPFQLGVQKGSALPKAPEWKFNVSPRYEVAVGNGKIV
EEECCCCHHHHHHHHCCCCCCCCCHHEEEECCCCCCCCCCCEEEECCCCEEEEECCCEEE
ALADWTHTTGMRNDTEGTILLLRPTTDIVNASLQYQAPDNQWNLTVGGTNITNERYLVTG
EEECCCCCCCCCCCCCCEEEEEECCHHHHCCEEEEECCCCCEEEEECCCCCCCCEEEEEE
QAQIAGGQIYGTYSRPAEWYVRLGFEF
CEEEECCEEEEECCCCCEEEEEEECCC
>Mature Secondary Structure 
PGASSKNQQGETNMRFASISIAALATAIAAPAFAQDQAQADDTRSGGIAEIVVTAQKRA
CCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCHHCCCCCCCCCCCCCEEEEEEEEHHHH
ENVQDVPIAITAFTAGALQERAVGDVSALSGITPNVTLDASTPFSGSSAVLGATIRGIGS
CCCCCCCEEEEEEECHHHHHHHCCCHHHHCCCCCCEEEECCCCCCCCCEEEEEEEECCCC
SDFAFNIDPAVGVYLDGVYLGRSIGANQDLLDVERIEVLKGPQGTLFGRNTIGGAISIVT
CCCEEECCCCCEEEECCEEECCCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCEEEEEE
HNPGDEFHAKGDVTVGRFNRIQARGLVDIPLAPGLSSSVAFGLHKRDGFQKRVAYSDPGA
CCCCCCCCCCCCEEECCCCEEEECCEEEECCCCCCCCHHEEEECCCCCCHHEEEECCCCC
NDSFTLFPASGYETRSRQGGDNSWNLRGKLRWDDGGKFRATFSADYTNIDQDSTANTVLA
CCCEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEE
VTPIPGPFAGVAENNIPGTALDVVTGSSGFLFAGLYNFCIGATAQQIADRNATNLCGPRS
EECCCCCCCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHHCCHHHHHHCCCCCCCCCCCC
SVNGYLTLPGLASRNVDGDPYNDLLPYDGRWVNTDKDVSYANGNNFSKLKQWGLGLNLEY
CCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCHHHHHHHCCCCEEEE
DLTDNIALKSITSYREVDFKAGVDLDNSPLPILQTSFIVDQYQFSQEVQLTGSAMDGALN
CCCCCEEHHHHHHHHHCCEECCCCCCCCCCCEEEHHHHHHHHHCCCEEEEECCHHCCEEE
FVLGGYGFKENGDLRDFVTFSAGLLQVDGPGKVDTEAYAGFGQVDWRVNDLIGISVGARY
EEEECCCCCCCCCHHHEEEECCCEEEECCCCCCCHHHHCCCCEEEEEEEEEEEEECCCEE
TKENKRYDGAQSDINGFNYKLFNCMALDPATGNPSAECAAGVGFPIPSEPFRYYPTSPNK
CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHCCCCCCCCCCCCEECCCCCCC
QTFDDFSYKLGLQLHPTEDVMAYGSFSRGYKTGGWTTRLSNPLPVAPTFGEEVAETFEAG
CCCCCCCEEEEEEECCCHHHHEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
VKSTLLDRRLQLNAAVFTTKYKGIQLNFQQGVSPTIQNAGDARIKGFEIEAVAAPADGFT
HHHHHHHHHHEEEEEEEEEEECCEEEEHHCCCCHHHCCCCCCEEEEEEEEEEECCCCCEE
ITASAGYLDAYYTNVLAPAQVAPNPFQLGVQKGSALPKAPEWKFNVSPRYEVAVGNGKIV
EEECCCCHHHHHHHHCCCCCCCCCHHEEEECCCCCCCCCCCEEEECCCCEEEEECCCEEE
ALADWTHTTGMRNDTEGTILLLRPTTDIVNASLQYQAPDNQWNLTVGGTNITNERYLVTG
EEECCCCCCCCCCCCCCEEEEEECCHHHHCCEEEEECCCCCEEEEECCCCCCCCEEEEEE
QAQIAGGQIYGTYSRPAEWYVRLGFEF
CEEEECCEEEEECCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1406279; 2174861 [H]