| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87199627
Identifier: 87199627
GI number: 87199627
Start: 1677803
End: 1679017
Strand: Direct
Name: 87199627
Synonym: Saro_1610
Alternate gene names: NA
Gene position: 1677803-1679017 (Clockwise)
Preceding gene: 87199626
Following gene: 87199628
Centisome position: 47.11
GC content: 67.08
Gene sequence:
>1215_bases ATGCACGGCCCCTTTGGCGAGCATGACCGTCGCGACCGGCGGTTTCTCGCCCTTTACGCCCTGGCCTGGGCAGGCGCCAC CATTGCCTATACGCCATTGCTCACCCTGCTCCTGCCGATGCACGTGGATGCGCAGGCAGGCGGCGATGGTGTCCGTTGGC TGGCGTTGACCACCTTTGCCGGCGCGCTCACCGCCAGCCTTGGCAATATCCTCTTCGGATGGTTGAGCGACCGAAGCGGA AGACGGCGGCCGTGGGTGCTGACGGGGCTCGGGCTTTCCAGTGCCCTGCTGATGCTTGTGCCCGAGGTGAAGTCGCTTGC CGCGCTCGCCGGCGTGATCATGCTCTGGCAGATCGGTCTCAACATGATGCTCGGGCCGCTGGCCGCATGGGCGGGGGACC GGGTTCCCGACCGGCGCAAGGGCCTTCTCGGAGGTCTTCTGGCTTTTGCACCGGCATCGGGTGCGCTGGCGGGGGCCTTC GTCACGATACCGGGCCTTGCCGATCTACCGCAGCGCTTCGATATCGTTGCCGCGATCGTTGCCTTGTGCGTACTGCCCCT GGCCATTCTTGGGGAAGATGGCTTTGCCGGGGCTGGGCAGCCGGAAGTTTCGGACGACACGCCTGCCGTCGCGGCGGCGC TCCTTCGCGCATTGGCAACGCGAATGTGGTTCGCCCGGCTTCTGGTGCAGGTCTCGGAGGCATCGCTCTTCGCCTACTTC TACTTGTGGCTGCGGACTGTCGATCCCTCATTTGGCGATGCGGCGATCGCGCGGGTGCTTCTCGTTGCCATGCTGATCGG CGCGTTGACCGCGCTGCTCGCCGGGCACTGGGCCGACCGGCGCGGGCGGCCGGTGACGCCGCTCGTGGTTGCTTCCGGGG GCGGAGCGGTCGGGTTGGTGGCGATGGCGCTGGCCTCGAACGCGGCGCAGGCGGTGGCGGGTTACCTTGTGTTCGGGCTG TCCACGTCCGTGTTCCTCGCGCTCCACAGCGCCCAGACCCTTCGCGTATTGCCCGATGGCGCACGGCGTGGGCGAAACTT GGGATTGTTCAATCTTACCAATACCCTACCGTCGCTGGCGGTCCCGTCGCTCACGCTCACCCTGGTTCCGGCGCTAGGGT TCTCCGGGCTGTTCCTGGCCTTGGCGGCGCTTTCCCTGCTGGCGCTTGTGCTTCTCGTCCGGGCGCCGTCCTCCACGCTT CGTCGCGAAGGCTGA
Upstream 100 bases:
>100_bases CACCGCAAGCCCGATGCCGACATGGGCCCGGTGGTCATGCCGATGGGTTTCGAGATCCGCGGCTCTACCGCGCCTTTCGG CAAGGGCGGCTAGTTTCCCC
Downstream 100 bases:
>100_bases GGCAGGGGTTGATTTCCCCGCAGGGACATGACAAACGACGTTTGAGAACGTTCACAGAATAATGGGGTAGTCGATGCCGA TGCGAGCACACCTGCGGGGC
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MHGPFGEHDRRDRRFLALYALAWAGATIAYTPLLTLLLPMHVDAQAGGDGVRWLALTTFAGALTASLGNILFGWLSDRSG RRRPWVLTGLGLSSALLMLVPEVKSLAALAGVIMLWQIGLNMMLGPLAAWAGDRVPDRRKGLLGGLLAFAPASGALAGAF VTIPGLADLPQRFDIVAAIVALCVLPLAILGEDGFAGAGQPEVSDDTPAVAAALLRALATRMWFARLLVQVSEASLFAYF YLWLRTVDPSFGDAAIARVLLVAMLIGALTALLAGHWADRRGRPVTPLVVASGGGAVGLVAMALASNAAQAVAGYLVFGL STSVFLALHSAQTLRVLPDGARRGRNLGLFNLTNTLPSLAVPSLTLTLVPALGFSGLFLALAALSLLALVLLVRAPSSTL RREG
Sequences:
>Translated_404_residues MHGPFGEHDRRDRRFLALYALAWAGATIAYTPLLTLLLPMHVDAQAGGDGVRWLALTTFAGALTASLGNILFGWLSDRSG RRRPWVLTGLGLSSALLMLVPEVKSLAALAGVIMLWQIGLNMMLGPLAAWAGDRVPDRRKGLLGGLLAFAPASGALAGAF VTIPGLADLPQRFDIVAAIVALCVLPLAILGEDGFAGAGQPEVSDDTPAVAAALLRALATRMWFARLLVQVSEASLFAYF YLWLRTVDPSFGDAAIARVLLVAMLIGALTALLAGHWADRRGRPVTPLVVASGGGAVGLVAMALASNAAQAVAGYLVFGL STSVFLALHSAQTLRVLPDGARRGRNLGLFNLTNTLPSLAVPSLTLTLVPALGFSGLFLALAALSLLALVLLVRAPSSTL RREG >Mature_404_residues MHGPFGEHDRRDRRFLALYALAWAGATIAYTPLLTLLLPMHVDAQAGGDGVRWLALTTFAGALTASLGNILFGWLSDRSG RRRPWVLTGLGLSSALLMLVPEVKSLAALAGVIMLWQIGLNMMLGPLAAWAGDRVPDRRKGLLGGLLAFAPASGALAGAF VTIPGLADLPQRFDIVAAIVALCVLPLAILGEDGFAGAGQPEVSDDTPAVAAALLRALATRMWFARLLVQVSEASLFAYF YLWLRTVDPSFGDAAIARVLLVAMLIGALTALLAGHWADRRGRPVTPLVVASGGGAVGLVAMALASNAAQAVAGYLVFGL STSVFLALHSAQTLRVLPDGARRGRNLGLFNLTNTLPSLAVPSLTLTLVPALGFSGLFLALAALSLLALVLLVRAPSSTL RREG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42160; Mature: 42160
Theoretical pI: Translated: 10.87; Mature: 10.87
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHGPFGEHDRRDRRFLALYALAWAGATIAYTPLLTLLLPMHVDAQAGGDGVRWLALTTFA CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH GALTASLGNILFGWLSDRSGRRRPWVLTGLGLSSALLMLVPEVKSLAALAGVIMLWQIGL HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NMMLGPLAAWAGDRVPDRRKGLLGGLLAFAPASGALAGAFVTIPGLADLPQRFDIVAAIV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHEECCCCCCCHHHHHHHHHHH ALCVLPLAILGEDGFAGAGQPEVSDDTPAVAAALLRALATRMWFARLLVQVSEASLFAYF HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLWLRTVDPSFGDAAIARVLLVAMLIGALTALLAGHWADRRGRPVTPLVVASGGGAVGLV HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHH AMALASNAAQAVAGYLVFGLSTSVFLALHSAQTLRVLPDGARRGRNLGLFNLTNTLPSLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHCCCCCCEEEHHHHHHHHH VPSLTLTLVPALGFSGLFLALAALSLLALVLLVRAPSSTLRREG CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC >Mature Secondary Structure MHGPFGEHDRRDRRFLALYALAWAGATIAYTPLLTLLLPMHVDAQAGGDGVRWLALTTFA CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH GALTASLGNILFGWLSDRSGRRRPWVLTGLGLSSALLMLVPEVKSLAALAGVIMLWQIGL HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NMMLGPLAAWAGDRVPDRRKGLLGGLLAFAPASGALAGAFVTIPGLADLPQRFDIVAAIV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHEECCCCCCCHHHHHHHHHHH ALCVLPLAILGEDGFAGAGQPEVSDDTPAVAAALLRALATRMWFARLLVQVSEASLFAYF HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLWLRTVDPSFGDAAIARVLLVAMLIGALTALLAGHWADRRGRPVTPLVVASGGGAVGLV HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHH AMALASNAAQAVAGYLVFGLSTSVFLALHSAQTLRVLPDGARRGRNLGLFNLTNTLPSLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHCCCCCCEEEHHHHHHHHH VPSLTLTLVPALGFSGLFLALAALSLLALVLLVRAPSSTLRREG CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA